Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2901

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2900: 11268 - BLAST pyridoxamine-phosphate oxidase [Moniliophthora ro..., at 493675 to 494245 11268 mRNA_2901: 11269 - KOG1289 Amino acid transporters, at 494917 to 497480 11269 mRNA_2902: 11270 - K20367 ERGIC3, ERV46 endoplasmic reticulum-Golgi intermediate compartment protein 3, at 498164 to 500409 11270

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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494,113 + 11268 mRNA_2900 0.77 0.8
494,367 + 0.3
494,433 + -1.4
494,489 + 1.1
494,513 + 1.0
494,547 + -0.6
494,604 - -0.2
494,604 - 1.3
494,635 - -3.0
494,646 + -0.1
494,651 + -0.8
494,655 + 2.2
494,655 - 0.8
494,656 + -0.8
494,684 + 2.0
494,684 - 2.4
494,687 - -0.7
494,692 - 0.9
494,699 - 2.7
494,700 - 1.3
494,701 + 1.2
494,717 + 1.7
494,722 - 2.6
494,816 + 0.3
494,818 - -1.0
494,837 - 1.4
494,851 - 2.4
494,861 + -0.3
494,874 + 1.5
494,927 - 0.8
494,988 - 1.2
495,011 - 1.0
495,016 - -1.3
495,052 + -1.2
495,129 - -0.8
495,162 - 1.8
495,276 + 11269 mRNA_2901 0.14 0.0
495,336 + 11269 mRNA_2901 0.16 -0.7
495,578 - 11269 mRNA_2901 0.26 -0.9
495,745 + 11269 mRNA_2901 0.32 -1.6
495,778 - 11269 mRNA_2901 0.34 0.1
496,459 - 11269 mRNA_2901 0.60 -0.2
496,502 - 11269 mRNA_2901 0.62 1.0
496,591 + 11269 mRNA_2901 0.65 0.3
496,602 - 11269 mRNA_2901 0.66 -0.4
496,713 - 11269 mRNA_2901 0.70 -0.9
496,727 + 11269 mRNA_2901 0.71 -0.9
496,786 - 11269 mRNA_2901 0.73 -1.8
497,060 + 11269 mRNA_2901 0.84 1.1
497,175 - 11269 mRNA_2901 0.88 0.9
497,180 + 11269 mRNA_2901 0.88 1.5
497,457 - 2.8
497,725 + 0.2
497,886 + 0.2
497,917 + 2.8
497,935 + 0.1
497,999 - -0.3
498,064 - 0.9
498,101 - 1.0
498,191 - 0.7
498,232 - 0.0