Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2893

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2892: 11260 - HMMPfam-Protein of unknown function (DUF2823)-PF11034, at 471192 to 473300 11260 mRNA_2893: 11261 - HMMPfam-Protein of unknown function (DUF2823)-PF11034, at 473665 to 474267 11261 mRNA_2894: 11262 - SUPERFAMILY--SSF52047, at 474983 to 476277 11262

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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472,766 - 11260 mRNA_2892 0.75 1.3
472,768 - 11260 mRNA_2892 0.75 -1.1
472,786 - 11260 mRNA_2892 0.76 -1.4
472,792 + 11260 mRNA_2892 0.76 -0.8
472,793 + 11260 mRNA_2892 0.76 0.5
472,800 - 11260 mRNA_2892 0.76 -0.0
472,809 + 11260 mRNA_2892 0.77 0.6
472,838 - 11260 mRNA_2892 0.78 -0.4
472,839 + 11260 mRNA_2892 0.78 0.5
472,845 + 11260 mRNA_2892 0.78 -0.7
472,859 - 11260 mRNA_2892 0.79 0.1
472,886 + 11260 mRNA_2892 0.80 0.5
472,911 - 11260 mRNA_2892 0.82 1.1
472,918 - 11260 mRNA_2892 0.82 -0.3
472,924 + 11260 mRNA_2892 0.82 0.4
473,071 - 11260 mRNA_2892 0.89 1.6
473,076 - 11260 mRNA_2892 0.89 1.1
473,094 + -0.3
473,267 - -1.0
473,276 - 0.5
473,389 + 0.4
473,449 + 1.1
473,463 - -0.9
473,471 + 0.0
473,494 + -0.2
473,499 - 0.8
473,499 - 0.3
473,501 - 0.1
473,505 - 0.5
473,525 + -0.6
473,532 + 2.1
473,532 - -0.3
473,533 - -2.7
473,541 - 0.1
473,544 - 1.2
473,547 + 2.3
473,550 - 1.1
473,551 - -0.5
473,552 + -0.2
473,552 + -0.7
473,553 - 0.0
473,562 + -0.5
473,564 - 0.1
473,567 - -1.2
473,570 - 0.9
473,572 + 0.2
473,578 - 0.1
473,585 + 0.3
473,720 + -2.1
473,728 + 11261 mRNA_2893 0.10 -0.8
473,858 + 11261 mRNA_2893 0.32 -1.2
473,872 + 11261 mRNA_2893 0.34 0.4
473,884 + 11261 mRNA_2893 0.36 0.7
475,240 + 11262 mRNA_2894 0.20 -0.8