Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2888

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2887: 11255 - K07442 TRM61, GCD14 tRNA (adenine57-N1/adenine58-N1)-methyltransferase catalytic subunit, at 458953 to 460669 11255 mRNA_2888: 11256 - KOG1012 Ca2+-dependent lipid-binding protein CLB1/vesicle protein vp115/Granuphilin A, contains C2 domain, at 461121 to 465686 11256 mRNA_2889: 11257 - K08184 SLC16A7 MFS transporter, MCP family, solute carrier family 16 (monocarboxylic acid transporters), member 7, at 466050 to 468099 11257

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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460,666 + 2.5
460,673 - 1.2
460,845 - 2.7
460,875 - -0.6
460,939 - 0.8
460,958 - 0.7
460,973 - -0.2
460,975 + -0.9
460,985 - -0.1
460,985 + -0.1
460,998 - -2.0
461,000 + -0.6
461,005 + 0.8
461,019 - 2.3
461,102 - 1.0
461,131 + 0.1
461,131 + -0.3
461,139 - 0.5
461,173 + -1.0
461,231 - 0.7
461,277 - 1.2
461,289 - 1.5
461,318 - 0.3
461,326 + -1.7
461,384 + 2.1
461,411 - -2.4
461,449 - -1.0
461,475 - -1.4
461,595 + 11256 mRNA_2888 0.10 2.6
461,720 + 11256 mRNA_2888 0.13 2.9
461,847 + 11256 mRNA_2888 0.16 -1.6
461,986 - 11256 mRNA_2888 0.19 0.6
462,151 + 11256 mRNA_2888 0.23 0.3
462,306 - 11256 mRNA_2888 0.26 1.3
462,318 + 11256 mRNA_2888 0.26 -0.9
462,367 - 11256 mRNA_2888 0.27 0.0
462,563 - 11256 mRNA_2888 0.32 0.9
462,682 + 11256 mRNA_2888 0.34 -0.7
462,883 - 11256 mRNA_2888 0.39 1.4
462,940 + 11256 mRNA_2888 0.40 0.2
463,043 + 11256 mRNA_2888 0.42 2.8
463,233 - 11256 mRNA_2888 0.46 0.4
463,331 + 11256 mRNA_2888 0.48 1.0
463,377 + 11256 mRNA_2888 0.49 -1.0
463,379 - 11256 mRNA_2888 0.49 0.5
463,419 + 11256 mRNA_2888 0.50 1.0
463,482 + 11256 mRNA_2888 0.52 -0.9
463,636 + 11256 mRNA_2888 0.55 -0.4
464,057 - 11256 mRNA_2888 0.64 2.2
464,215 - 11256 mRNA_2888 0.68 1.8
464,239 - 11256 mRNA_2888 0.68 -0.6
464,372 - 11256 mRNA_2888 0.71 1.0
464,373 - 11256 mRNA_2888 0.71 -0.0
464,408 + 11256 mRNA_2888 0.72 1.7
464,524 + 11256 mRNA_2888 0.75 -0.3
464,598 - 11256 mRNA_2888 0.76 1.8
464,624 + 11256 mRNA_2888 0.77 0.0
464,625 - 11256 mRNA_2888 0.77 0.3
464,780 - 11256 mRNA_2888 0.80 -0.6
464,955 + 11256 mRNA_2888 0.84 0.7
464,982 - 11256 mRNA_2888 0.85 1.2
465,112 - 11256 mRNA_2888 0.87 0.0
465,119 + 11256 mRNA_2888 0.88 0.8
465,129 + 11256 mRNA_2888 0.88 -0.1
465,154 - 11256 mRNA_2888 0.88 -0.7
465,289 + 2.4
465,571 + -1.5
465,846 - 0.7
465,865 + -0.5
465,933 - -0.7
465,968 - 0.0
465,973 + 1.6
465,982 + -1.3
465,983 - -1.2
465,991 + -0.3
466,133 - 1.8
466,153 - 0.2
466,193 + 0.7
466,270 - 11257 mRNA_2889 0.11 -0.4
466,271 - 11257 mRNA_2889 0.11 -0.3
466,284 + 11257 mRNA_2889 0.11 0.6