Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2881

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2880: 11248 - K10531 pvdA L-ornithine N5-oxygenase, at 436140 to 438445 11248 mRNA_2881: 11249 - KOG0254 Predicted transporter (major facilitator superfamily), at 439393 to 442330 11249 mRNA_2882: 11250 - Hypothetical Protein, at 443067 to 444033 11250

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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438,405 + -1.4
438,415 + -0.2
438,514 + 0.8
438,519 - 1.4
438,667 - 0.0
438,669 + 2.3
438,702 - 2.3
438,785 - 0.8
438,790 + 0.2
438,816 + 0.4
438,932 - 0.8
438,940 - -0.7
438,954 + 0.4
438,966 - -0.1
438,970 + 0.4
438,972 + 1.3
438,972 + 1.4
438,973 - 1.7
438,976 - 2.3
438,977 - -0.2
438,979 - 1.1
439,006 - 4.1
439,006 - -0.3
439,006 - 1.2
439,020 + 1.7
439,020 - -0.3
439,023 + 3.3
439,031 - 1.6
439,038 - 0.5
439,038 - 0.7
439,039 - 1.3
439,039 - -0.1
439,054 + 1.0
439,111 + 0.4
439,121 - 0.1
439,138 - 0.4
439,231 - -0.7
439,233 - 1.3
439,237 + -0.1
439,242 + 0.9
439,243 - 0.1
439,246 - 1.4
439,257 + -0.2
439,275 + 0.5
439,275 - 2.3
439,284 + 0.7
439,296 + 1.2
439,322 - -1.1
439,326 - 1.3
439,330 + -0.1
439,336 + 0.8
439,337 - 1.6
439,353 + 0.3
439,375 - 0.9
439,475 + 1.9
439,479 + -0.2
439,486 - 0.4
439,493 - 0.5
439,498 - 0.4
439,500 - 0.0
439,504 + 1.8
439,510 + 1.8
439,511 + 0.5
439,514 + 0.7
439,517 + 0.6
439,576 - 0.7
439,579 - -0.5
439,600 - 0.3
439,607 - -0.9
439,613 - -0.1
439,621 + 1.5
439,630 - 0.1
439,639 - 0.4
439,645 - 0.9
439,651 - 1.7
439,667 - 1.6
439,679 - -0.8
439,814 - 11249 mRNA_2881 0.14 1.1
439,846 - 11249 mRNA_2881 0.15 -0.2
440,057 - 11249 mRNA_2881 0.23 0.1
440,136 + 11249 mRNA_2881 0.25 0.8
440,336 + 11249 mRNA_2881 0.32 0.1
440,519 + 11249 mRNA_2881 0.38 -1.0
440,529 - 11249 mRNA_2881 0.39 0.5
440,674 - 11249 mRNA_2881 0.44 -2.4
440,677 + 11249 mRNA_2881 0.44 -1.4
440,729 + 11249 mRNA_2881 0.45 0.6
440,812 - 11249 mRNA_2881 0.48 -1.3
440,979 - 11249 mRNA_2881 0.54 0.5
441,099 + 11249 mRNA_2881 0.58 -1.6
441,680 - 11249 mRNA_2881 0.78 0.7
441,834 - 11249 mRNA_2881 0.83 0.9
442,014 - 11249 mRNA_2881 0.89 -0.4
442,149 - 0.2
442,273 - 0.7
442,279 + -3.8
442,286 - -0.6
442,292 - 0.1
442,375 + -0.0
442,388 - 0.5
442,414 - 0.6
442,434 - -1.1
442,566 - -0.2
442,737 - 0.8
443,016 - 1.8
443,168 + 11250 mRNA_2882 0.10 -1.1
443,325 - 11250 mRNA_2882 0.27 0.2
443,330 - 11250 mRNA_2882 0.27 1.3