Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2879

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2878: 11246 - BLAST proteophosphoglycan ppg4 [Moesziomyces aphidis DSM 70..., at 431152 to 434004 11246 mRNA_2879: 11247 - HMMPfam-Protein of unknown function (DUF3237)-PF11578, at 434192 to 435080 11247

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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433,200 - 11246 mRNA_2878 0.72 -1.4
433,300 + 11246 mRNA_2878 0.75 -2.9
433,340 - 11246 mRNA_2878 0.77 -0.8
433,444 - 11246 mRNA_2878 0.80 -0.5
433,619 + 11246 mRNA_2878 0.86 1.0
433,619 + 11246 mRNA_2878 0.86 -0.2
433,768 + -0.7
433,777 + 0.5
433,879 + -0.1
433,900 - 0.4
433,909 + 0.5
433,923 - -0.4
434,033 + 0.4
434,112 - -1.2
434,119 + -0.3
434,120 + -1.1
434,120 - -0.6
434,130 - 0.5
434,243 + -1.4
434,295 - 11247 mRNA_2879 0.12 -0.4
434,697 - 11247 mRNA_2879 0.57 0.6
434,890 - 11247 mRNA_2879 0.79 -0.2
435,639 + 0.1
435,681 - 0.5
435,712 + 0.1
435,719 - 1.3
435,735 - 0.9
435,767 + 1.1
435,857 + -0.2
435,875 + 1.3
435,880 + -1.2
435,947 + -0.6
435,948 - -0.8
436,005 - 0.3
436,012 - 0.8
436,014 + 0.9
436,016 + -0.0
436,023 + -0.2
436,040 - 0.7
436,049 - -0.5
436,058 - 0.3
436,058 + 0.1
436,060 + 1.0
436,063 + -0.0