Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2872

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2871: 11239 - HMMPfam-bZIP transcription factor-PF00170,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959, at 411310 to 412108 11239 mRNA_2872: 11240 - HMMPfam-Pyridine nucleotide-disulphide oxidoreductase-PF00070,PRINTS-FAD-dependent pyridine nucleotide reductase signature-PR00368,PRINTS-Pyridine nucleotide disulphide reductase class-I signature-PR00411,SUPERFAMILY--SSF51905, at 412487 to 414015 11240 mRNA_2873: 11241 - HMMPfam-Yeast cortical protein KAR9-PF08580,ProSiteProfiles-GAR domain profile.-PS51460,SUPERFAMILY--SSF143575, at 414211 to 417159 11241

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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411,506 - 11239 mRNA_2871 0.25 0.3
411,531 + 11239 mRNA_2871 0.28 0.3
411,660 - 11239 mRNA_2871 0.44 -0.5
411,687 + 11239 mRNA_2871 0.47 0.7
411,692 - 11239 mRNA_2871 0.48 0.5
411,692 - 11239 mRNA_2871 0.48 -0.5
411,695 + 11239 mRNA_2871 0.48 -0.7
411,841 - 11239 mRNA_2871 0.66 -0.6
411,938 - 11239 mRNA_2871 0.79 3.1
411,944 - 11239 mRNA_2871 0.79 1.5
412,077 + -0.1
412,102 - 0.1
412,123 + -0.6
412,239 - 0.9
412,278 - 0.5
412,281 + 0.5
412,285 + 2.3
412,287 - 0.8
412,288 - 1.8
412,288 - -0.1
412,293 + 0.3
412,294 + 0.4
412,301 - 0.0
412,303 - 0.1
412,309 + 0.1
412,317 - 0.7
412,318 - 3.3
412,368 - -0.6
412,615 + -0.8
412,769 - 11240 mRNA_2872 0.18 -0.2
412,914 - 11240 mRNA_2872 0.28 1.0
413,045 + 11240 mRNA_2872 0.36 1.4
413,090 + 11240 mRNA_2872 0.39 1.1
413,579 - 11240 mRNA_2872 0.71 -0.8
413,636 + 11240 mRNA_2872 0.75 -0.1
413,685 + 11240 mRNA_2872 0.78 1.1
413,763 + 11240 mRNA_2872 0.83 1.3
413,775 + 11240 mRNA_2872 0.84 2.7
413,884 + 0.6
414,035 - 0.1
414,053 + -0.1
414,219 - 0.9
414,225 + -0.1
414,313 + -0.2
414,605 - 11241 mRNA_2873 0.13 -0.1
414,720 - 11241 mRNA_2873 0.17 0.1
414,815 - 11241 mRNA_2873 0.20 0.0
414,898 + 11241 mRNA_2873 0.23 0.2