Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2857

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2856: 11224 - K14288 XPOT exportin-T, at 377812 to 382012 11224 mRNA_2857: 11225 - K11247 SH3GL endophilin-A, at 382503 to 383665 11225 mRNA_2858: 11226 - HMMPfam-Translocon-associated protein (TRAP), alpha subunit-PF03896, at 383912 to 385065 11226

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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382,130 + 2.8
382,260 + -0.1
382,396 - 0.1
382,403 + 0.9
382,417 - -0.5
382,548 - 0.6
382,551 - -1.8
382,565 + -1.0
382,838 + 11225 mRNA_2857 0.29 0.3
382,989 + 11225 mRNA_2857 0.42 2.1
383,066 + 11225 mRNA_2857 0.48 0.6
383,095 + 11225 mRNA_2857 0.51 0.1
383,264 - 11225 mRNA_2857 0.65 0.1
383,318 + 11225 mRNA_2857 0.70 -1.6
383,734 - -0.2
383,741 + 1.1
383,862 + 1.1
383,885 + -0.7
383,890 + 0.5
384,022 - -0.8
384,022 - -0.3
384,160 - 11226 mRNA_2858 0.21 -1.6
384,278 - 11226 mRNA_2858 0.32 -0.0
384,290 - 11226 mRNA_2858 0.33 -0.1
384,324 + 11226 mRNA_2858 0.36 -0.4
384,599 - 11226 mRNA_2858 0.60 -0.5