Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2826

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2825: 11193 - HMMPfam-F-box-like-PF12937, at 306880 to 308238 11193 mRNA_2826: 11194 - HMMPfam-Methyltransferase domain-PF13489,SUPERFAMILY--SSF53335, at 308472 to 309591 11194 mRNA_2827: 11195 - Hypothetical Protein, at 309657 to 312569 11195

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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307,908 - 11193 mRNA_2825 0.76 1.1
307,921 - 11193 mRNA_2825 0.77 0.4
307,924 - 11193 mRNA_2825 0.77 -0.8
307,927 - 11193 mRNA_2825 0.77 0.1
307,950 + 11193 mRNA_2825 0.79 0.3
308,070 - 11193 mRNA_2825 0.88 0.0
308,071 + 11193 mRNA_2825 0.88 0.8
308,083 + 11193 mRNA_2825 0.89 1.3
308,088 - 11193 mRNA_2825 0.89 0.9
308,091 - 11193 mRNA_2825 0.89 1.0
308,091 + 11193 mRNA_2825 0.89 0.7
308,198 - -0.9
308,198 - 0.3
308,203 - -0.3
308,209 + 2.0
308,209 + 0.6
308,212 - -1.5
308,213 + -0.3
308,216 + 0.6
308,232 + -0.7
308,245 - -1.0
308,261 - 0.8
308,262 + -0.4
308,359 + 0.4
308,372 + 0.3
308,388 + -1.8
308,395 + -0.4
308,401 + 0.7
308,417 - 0.3
308,418 - 1.2
308,418 + -0.2
308,424 - -1.1
308,431 - 0.9
308,535 + -0.2
308,557 - 3.9
308,569 + -0.2
308,579 + 0.8
308,582 - 2.1
308,583 - 0.2
308,586 - 11194 mRNA_2826 0.10 -1.0
308,589 - 11194 mRNA_2826 0.10 0.2
308,708 + 11194 mRNA_2826 0.21 0.3
308,725 - 11194 mRNA_2826 0.23 2.1
308,870 + 11194 mRNA_2826 0.36 -0.0
308,997 + 11194 mRNA_2826 0.47 1.2
309,058 + 11194 mRNA_2826 0.52 1.3
309,177 - 11194 mRNA_2826 0.63 1.1
309,632 + 0.6
309,714 + 0.4