Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2823

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2822: 11190 - SUPERFAMILY--SSF52047, at 301729 to 303000 11190 mRNA_2823: 11191 - HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF52047, at 303480 to 304770 11191 mRNA_2824: 11192 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 304875 to 305755 11192

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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302,659 - 11190 mRNA_2822 0.73 1.9
303,362 + -1.1
303,509 + 1.8
303,567 + 0.9
303,671 - 11191 mRNA_2823 0.15 2.4
303,757 - 11191 mRNA_2823 0.21 0.1
303,782 - 11191 mRNA_2823 0.23 -0.9
303,796 + 11191 mRNA_2823 0.24 0.9
303,939 - 11191 mRNA_2823 0.36 0.6
303,945 + 11191 mRNA_2823 0.36 2.5
303,952 - 11191 mRNA_2823 0.37 1.3
303,962 + 11191 mRNA_2823 0.37 -0.2
303,964 + 11191 mRNA_2823 0.37 1.9
304,045 - 11191 mRNA_2823 0.44 0.2
304,090 + 11191 mRNA_2823 0.47 -1.0
304,091 - 11191 mRNA_2823 0.47 0.3
304,118 - 11191 mRNA_2823 0.49 -1.5
304,131 + 11191 mRNA_2823 0.50 -1.1
304,134 - 11191 mRNA_2823 0.51 0.1
304,237 - 11191 mRNA_2823 0.59 -0.9
304,294 - 11191 mRNA_2823 0.63 0.2
304,294 - 11191 mRNA_2823 0.63 -0.4
304,300 + 11191 mRNA_2823 0.64 -0.6
304,300 + 11191 mRNA_2823 0.64 -0.8
304,321 - 11191 mRNA_2823 0.65 2.2
304,386 - 11191 mRNA_2823 0.70 2.4
304,400 + 11191 mRNA_2823 0.71 -0.0
304,485 - 11191 mRNA_2823 0.78 1.8
304,526 - 11191 mRNA_2823 0.81 0.2
304,555 + 11191 mRNA_2823 0.83 0.7
304,582 + 11191 mRNA_2823 0.85 -1.5
304,832 + 0.4
304,832 + 0.9
305,177 - 11192 mRNA_2824 0.34 -0.5
305,269 - 11192 mRNA_2824 0.45 1.5
305,467 - 11192 mRNA_2824 0.67 -0.1
305,590 + 11192 mRNA_2824 0.81 -0.6
305,739 - 0.1