Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2796

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2795: 11163 - SUPERFAMILY--SSF56112, at 233342 to 236388 11163 mRNA_2796: 11164 - K08286 E2.7.11.- protein-serine/threonine kinase, at 236700 to 240335 11164 mRNA_2797: 11165 - HMMPfam-CBP4-PF07960, at 240577 to 240997 11165 mRNA_2798: 11166 - K03537 POP5 ribonuclease P/MRP protein subunit POP5, at 241326 to 242097 11166

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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235,713 + 11163 mRNA_2795 0.78 0.1
235,775 + 11163 mRNA_2795 0.80 0.2
235,822 + 11163 mRNA_2795 0.81 1.5
235,860 + 11163 mRNA_2795 0.83 0.2
236,129 + 0.5
236,291 + 0.6
236,302 - -1.0
236,326 + 2.9
236,487 + -1.1
236,589 + 0.0
236,604 + 0.4
236,621 - 2.8
239,390 - 11164 mRNA_2796 0.74 0.6
240,048 - 2.6
240,172 + -0.9
240,245 + -0.2
240,377 + 3.1
240,518 - 0.9
240,527 + -0.4
240,657 - 11165 mRNA_2797 0.19 -1.2
240,664 + 11165 mRNA_2797 0.21 0.3
240,794 - 11165 mRNA_2797 0.52 2.6
240,820 - 11165 mRNA_2797 0.58 0.1
240,840 + 11165 mRNA_2797 0.62 1.1
240,956 - 0.7
241,121 - 2.1
241,268 - 1.2