Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2794

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2793: 11161 - KOG3834 Golgi reassembly stacking protein GRASP65, contains PDZ domain, at 228041 to 229604 11161 mRNA_2794: 11162 - BLAST protein FAM72A [Rattus norvegicus], at 230035 to 232978 11162 mRNA_2795: 11163 - SUPERFAMILY--SSF56112, at 233342 to 236388 11163

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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229,080 - 11161 mRNA_2793 0.66 1.7
229,253 + 11161 mRNA_2793 0.77 -0.4
229,263 + 11161 mRNA_2793 0.78 -0.6
229,264 - 11161 mRNA_2793 0.78 0.4
229,314 - 11161 mRNA_2793 0.81 -0.3
229,318 + 11161 mRNA_2793 0.82 1.7
229,528 - 1.2
229,546 + 1.4
229,553 + 0.8
229,556 + 1.9
229,806 + 0.3
229,838 + 0.6
229,846 + 0.1
229,873 + 0.1
229,958 + 0.2
229,989 - -0.2
229,991 + 0.4
229,991 - -0.6
230,289 - 0.3
230,312 + -0.5
230,595 + 11162 mRNA_2794 0.19 1.3
230,610 - 11162 mRNA_2794 0.20 -0.7
230,615 + 11162 mRNA_2794 0.20 0.0
230,616 + 11162 mRNA_2794 0.20 -1.6
230,616 - 11162 mRNA_2794 0.20 -0.7
230,758 - 11162 mRNA_2794 0.25 1.4
230,889 - 11162 mRNA_2794 0.29 -1.2
230,895 - 11162 mRNA_2794 0.29 0.1
231,099 + 11162 mRNA_2794 0.36 -1.4
231,212 - 11162 mRNA_2794 0.40 -0.0
231,212 - 11162 mRNA_2794 0.40 0.0
231,363 + 11162 mRNA_2794 0.45 -0.8
231,614 - 11162 mRNA_2794 0.54 0.4
232,039 - 11162 mRNA_2794 0.68 1.1
232,275 - 11162 mRNA_2794 0.76 2.9
232,302 - 11162 mRNA_2794 0.77 0.7
232,485 + 11162 mRNA_2794 0.83 0.3
232,513 + 11162 mRNA_2794 0.84 -0.6
232,545 + 11162 mRNA_2794 0.85 1.4
232,635 + 11162 mRNA_2794 0.88 -0.3
232,635 - 11162 mRNA_2794 0.88 0.9
232,637 + 11162 mRNA_2794 0.88 -0.3
232,643 - 11162 mRNA_2794 0.89 -1.2
232,668 - 11162 mRNA_2794 0.89 0.8
232,673 - 11162 mRNA_2794 0.90 0.3
232,673 - 11162 mRNA_2794 0.90 1.9
232,673 - 11162 mRNA_2794 0.90 -0.0
232,674 + 11162 mRNA_2794 0.90 1.7
232,674 + 11162 mRNA_2794 0.90 2.1
232,674 + 11162 mRNA_2794 0.90 0.4
232,674 + 11162 mRNA_2794 0.90 1.9
232,684 + 1.0
232,738 + -0.9
232,885 - 0.1
232,905 - 1.7
232,935 - 0.7
232,935 - -0.5
232,953 - -1.2
232,958 + -0.6
233,045 - 0.8
233,077 - 0.0
233,080 + 2.5
233,087 + -1.4
233,091 + 0.3
233,113 - -0.2
233,183 + 0.8
233,239 - 1.6
233,379 - 1.2
233,642 - 0.6
233,772 + 11163 mRNA_2795 0.14 -1.4