Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2793

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2792: 11160 - KOG1502 Flavonol reductase/cinnamoyl-CoA reductase, at 226043 to 228012 11160 mRNA_2793: 11161 - KOG3834 Golgi reassembly stacking protein GRASP65, contains PDZ domain, at 228041 to 229604 11161 mRNA_2794: 11162 - BLAST protein FAM72A [Rattus norvegicus], at 230035 to 232978 11162

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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227,080 - 11160 mRNA_2792 0.53 0.9
227,277 + 11160 mRNA_2792 0.63 0.0
227,436 - 11160 mRNA_2792 0.71 0.1
227,732 + 11160 mRNA_2792 0.86 2.1
227,755 + 11160 mRNA_2792 0.87 -0.1
227,811 - 11160 mRNA_2792 0.90 0.1
227,816 + 0.0
227,817 - 0.3
227,824 - -1.1
227,826 + 0.1
227,828 + -0.1
227,830 + 0.0
227,837 + -0.1
228,082 - 0.4
228,104 - -0.2
228,123 + -0.6
228,123 + -0.6
228,299 + 11161 mRNA_2793 0.16 0.4
228,303 + 11161 mRNA_2793 0.17 1.0
228,390 - 11161 mRNA_2793 0.22 1.6
228,549 + 11161 mRNA_2793 0.32 -0.5
228,563 + 11161 mRNA_2793 0.33 0.2
228,707 + 11161 mRNA_2793 0.43 -0.5
228,740 + 11161 mRNA_2793 0.45 0.9
228,830 - 11161 mRNA_2793 0.50 1.2
229,080 - 11161 mRNA_2793 0.66 1.7
229,253 + 11161 mRNA_2793 0.77 -0.4
229,263 + 11161 mRNA_2793 0.78 -0.6
229,264 - 11161 mRNA_2793 0.78 0.4
229,314 - 11161 mRNA_2793 0.81 -0.3
229,318 + 11161 mRNA_2793 0.82 1.7
229,528 - 1.2
229,546 + 1.4
229,553 + 0.8
229,556 + 1.9
229,806 + 0.3
229,838 + 0.6
229,846 + 0.1
229,873 + 0.1
229,958 + 0.2
229,989 - -0.2
229,991 + 0.4
229,991 - -0.6
230,289 - 0.3
230,312 + -0.5
230,595 + 11162 mRNA_2794 0.19 1.3