Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2779

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2778: 11146 - K15264 NSUN5, WBSCR20 putative methyltransferase, at 188984 to 191295 11146 mRNA_2779: 11147 - K18278 THI5 pyrimidine precursor biosynthesis enzyme, at 191425 to 193018 11147

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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190,735 + 11146 mRNA_2778 0.76 -1.1
190,941 - 11146 mRNA_2778 0.85 -0.2
190,942 + 11146 mRNA_2778 0.85 -0.8
190,964 - 11146 mRNA_2778 0.86 0.1
190,970 + 11146 mRNA_2778 0.86 0.4
191,153 - -2.2
191,153 + 1.0
191,161 + 0.0
191,319 + 0.4
191,320 - -0.1
191,348 - -0.2
191,430 - -0.1
191,441 - 0.8
191,552 + 0.2
191,580 - -1.4
191,763 + 11147 mRNA_2779 0.21 2.3
191,794 + 11147 mRNA_2779 0.23 0.5
192,023 - 11147 mRNA_2779 0.38 -3.3
192,129 + 11147 mRNA_2779 0.44 0.8
192,420 + 11147 mRNA_2779 0.62 -2.5
192,733 - 11147 mRNA_2779 0.82 1.6
192,852 - 11147 mRNA_2779 0.90 -1.9
192,990 + -0.8
192,990 + -2.0
192,995 - 0.3
193,008 + -1.3
193,018 - 0.6
193,021 + -0.5
193,052 + 0.1
193,120 + 0.3
193,253 + -0.9
193,285 - 3.4
193,308 + 0.1
193,309 - -0.2
193,310 - 0.2
193,318 + -0.5
193,321 - 0.4
193,330 + 1.6
193,383 - 0.8
193,384 + -0.4
193,391 + -0.9
193,397 - 0.2
193,397 - 1.0
193,404 + 0.2
193,414 - 1.4
193,435 - -0.6
193,462 - 0.4
193,478 - 1.6
193,480 - -2.0
193,489 - -1.8
193,522 - 0.0
193,529 + 0.4
193,543 + -0.1
193,563 + 2.0
193,573 - 1.4
193,578 + 0.2
193,578 + 1.1
193,582 + 0.4
193,600 + 0.0
193,615 - 2.8
193,621 + 2.0
193,622 + 0.8
193,623 + 1.2
193,703 + 1.6
193,745 + 0.8
193,749 + 0.2
193,875 - 0.6
193,900 + 1.5