Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2761

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2760: 11128 - HMMPfam-Acyltransferase-PF01553,SMART-Phosphate acyltransferases-SM00563,SUPERFAMILY--SSF69593, at 153952 to 156416 11128 mRNA_2761: 11129 - K00031 IDH1, IDH2, icd isocitrate dehydrogenase, at 157082 to 158929 11129 mRNA_2762: 11130 - BLAST Protein pof8 [Termitomyces sp. J132], at 159161 to 161620 11130

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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156,107 + 11128 mRNA_2760 0.87 -0.4
156,297 + 0.9
156,368 - 1.5
156,438 - 0.3
156,442 + -0.1
156,473 - -0.4
156,493 - 1.6
156,521 + 1.9
156,535 - 1.4
156,535 + 1.1
156,544 + -0.2
156,555 - 0.1
156,558 - -0.3
156,561 + -0.2
156,561 - 0.1
156,567 - -0.5
156,691 + -1.0
156,838 + 2.6
156,938 - -0.8
156,956 + 2.3
156,976 - 2.1
156,977 + 2.2
156,978 - 0.2
156,984 - -0.3
156,992 + -0.7
156,997 + 0.9
156,999 + 0.7
157,002 - -0.6
157,002 - -2.2
157,007 - 0.4
157,009 + -0.6
157,012 + 1.2
157,029 - -1.0
157,030 + -1.6
157,051 - 0.3
157,173 + -0.6
157,192 + -0.5
157,195 + 0.7
157,203 - 0.6
157,207 + 0.2
157,222 + -1.1
157,308 + 11129 mRNA_2761 0.12 -1.6
157,353 - 11129 mRNA_2761 0.15 -1.2
157,353 - 11129 mRNA_2761 0.15 -0.5
157,379 + 11129 mRNA_2761 0.16 3.3
157,382 + 11129 mRNA_2761 0.16 2.0
157,385 + 11129 mRNA_2761 0.16 -1.3
157,399 + 11129 mRNA_2761 0.17 1.3
157,459 - 11129 mRNA_2761 0.20 0.7
157,520 + 11129 mRNA_2761 0.24 0.4
157,520 + 11129 mRNA_2761 0.24 -0.8
157,520 + 11129 mRNA_2761 0.24 -1.9
157,666 + 11129 mRNA_2761 0.32 1.8
158,342 - 11129 mRNA_2761 0.68 2.3
158,404 + 11129 mRNA_2761 0.72 -0.3
158,418 + 11129 mRNA_2761 0.72 1.8
158,418 + 11129 mRNA_2761 0.72 -1.5
158,473 - 11129 mRNA_2761 0.75 0.8
158,800 - 0.1
158,978 + 1.8
159,108 - -0.2
159,110 - 0.4
159,546 + 11130 mRNA_2762 0.16 0.1
159,692 - 11130 mRNA_2762 0.22 3.8
159,823 + 11130 mRNA_2762 0.27 -0.1