Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2752

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2751: 11119 - HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF52047, at 136255 to 137508 11119 mRNA_2752: 11120 - HMMPfam-F-box-like-PF12937, at 138009 to 139329 11120 mRNA_2753: 11121 - HMMPfam-F-box-like-PF12937, at 139767 to 141011 11121

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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137,128 - 11119 mRNA_2751 0.70 0.3
137,393 + -1.2
137,429 - 0.5
137,455 + 1.1
137,554 + 3.4
137,672 - -0.7
137,708 - 0.5
137,716 - 0.6
137,734 + 0.3
137,758 + 2.3
137,883 + 1.1
137,894 - 1.7
138,013 - -1.5
138,021 + 0.9
138,141 - 11120 mRNA_2752 0.10 -1.0
138,190 + 11120 mRNA_2752 0.14 1.4
138,337 + 11120 mRNA_2752 0.25 1.1
138,349 + 11120 mRNA_2752 0.26 0.3
138,463 - 11120 mRNA_2752 0.34 -3.0
138,496 + 11120 mRNA_2752 0.37 0.4
138,636 - 11120 mRNA_2752 0.47 0.1
138,741 - 11120 mRNA_2752 0.55 -0.7
138,870 - 11120 mRNA_2752 0.65 2.9
139,172 - 11120 mRNA_2752 0.88 -0.3
139,193 - 11120 mRNA_2752 0.90 0.5
139,205 - 0.2
139,306 - -0.3
139,327 + -1.4
139,328 - 0.6
139,344 - 1.5
139,392 + 0.3
139,474 + 2.1
139,478 - 0.5
139,482 - 0.4
139,485 + -3.0
139,497 + -0.3
139,505 - 1.0
139,542 + 0.3
139,630 - -0.5
139,643 - 0.9
139,652 - -0.5
139,671 - -0.0
139,713 - 0.7
139,769 - 0.9
139,812 + -0.8
139,912 + 11121 mRNA_2753 0.12 -0.4
140,231 + 11121 mRNA_2753 0.37 1.4