Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2750

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2749: 11117 - K02146 ATPeV0D, ATP6D V-type H+-transporting ATPase subunit d, at 132510 to 133901 11117 mRNA_2750: 11118 - K14962 WDR82, SWD2, CPS35 COMPASS component SWD2, at 134141 to 135893 11118 mRNA_2751: 11119 - HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF52047, at 136255 to 137508 11119

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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133,825 - 0.5
133,912 + 0.6
133,967 - 0.4
134,050 - -1.1
134,136 + 0.3
134,163 - -0.4
134,180 - 1.3
134,316 - 0.5
134,545 + 11118 mRNA_2750 0.23 1.0
134,784 + 11118 mRNA_2750 0.37 0.8
135,197 - 11118 mRNA_2750 0.60 1.1
135,216 - 11118 mRNA_2750 0.61 0.7
135,219 - 11118 mRNA_2750 0.61 0.1
135,366 - 11118 mRNA_2750 0.70 2.0
135,367 + 11118 mRNA_2750 0.70 -0.3
135,372 - 11118 mRNA_2750 0.70 1.8
135,637 + 11118 mRNA_2750 0.85 2.3
135,653 + 11118 mRNA_2750 0.86 0.4
135,653 + 11118 mRNA_2750 0.86 0.1
135,699 - 11118 mRNA_2750 0.89 0.5
135,699 + 11118 mRNA_2750 0.89 1.3
135,824 - 0.8
135,923 + -1.5
135,935 + 0.6
135,949 - 0.2
135,951 - 0.3
135,961 - 0.2
135,961 - 1.2
135,964 + 1.5
135,966 + 0.1
135,978 - 0.5
135,999 + 2.6
136,107 - -0.1
136,117 - 0.4
136,151 - 0.2
136,263 - -0.2
136,264 - 0.1
136,272 + 0.4
136,432 + 11119 mRNA_2751 0.14 -0.6
136,439 + 11119 mRNA_2751 0.15 1.9
136,661 - 11119 mRNA_2751 0.32 1.0
136,712 - 11119 mRNA_2751 0.36 -1.9
136,725 + 11119 mRNA_2751 0.37 0.2
136,738 - 11119 mRNA_2751 0.39 1.1