Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2739

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2738: 11106 - K20121 FNBP1 formin-binding protein 1, at 107722 to 109356 11106 mRNA_2739: 11107 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 109775 to 112160 11107 mRNA_2740: 11108 - HMMPfam-SUR7/PalI family-PF06687, at 113053 to 114206 11108

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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108,784 - 11106 mRNA_2738 0.65 0.2
108,814 + 11106 mRNA_2738 0.67 0.4
108,872 + 11106 mRNA_2738 0.70 0.1
109,359 - -0.6
109,597 + 2.4
109,866 + 0.8
110,095 + 11107 mRNA_2739 0.13 0.3
110,170 - 11107 mRNA_2739 0.17 -0.1
110,219 + 11107 mRNA_2739 0.19 -1.4
110,493 + 11107 mRNA_2739 0.30 0.2
110,494 - 11107 mRNA_2739 0.30 -0.3
110,658 + 11107 mRNA_2739 0.37 -0.5
110,732 - 11107 mRNA_2739 0.40 0.2
110,732 - 11107 mRNA_2739 0.40 -0.3
111,221 + 11107 mRNA_2739 0.61 -0.2
112,067 - 0.5
112,069 - 1.2
112,241 - -1.8
112,242 + -1.9
112,251 - 0.5
112,256 + 0.2
112,257 - 1.8
112,333 + 0.3
112,402 + -0.2
112,465 - -0.2
112,601 - -2.8
112,623 - 0.0
112,630 + -3.1
112,638 + -1.8
112,647 + 0.3
112,649 + 0.1
112,709 - 1.0
112,717 + 1.5
112,745 - 1.0
112,782 - 1.7
112,785 - 1.6
112,789 - 2.1
112,789 - 2.6
112,800 + 0.1
112,805 - 1.6
112,807 + -0.3
112,807 - 0.6
112,808 - 0.3
112,809 - 1.5
112,814 + -2.0
112,814 - 0.5
112,817 - 0.1
112,817 + 0.6
112,830 + 0.1
112,840 + -0.4
112,842 + -0.1
112,852 - 0.7
112,852 + 0.8
112,855 + 0.9
112,855 + 1.9
112,971 + 0.9
112,975 + 1.7
112,982 - -0.4
112,985 - 2.0
112,987 + -1.8
112,997 + -0.2
112,997 - 0.0
113,005 - 1.0
113,112 + 1.3
113,123 + 0.2
113,124 - 1.6
113,132 + -0.0
113,149 + 0.6