Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2733

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2732: 11100 - Hypothetical Protein, at 95429 to 95692 11100 mRNA_2733: 11101 - KOG0254 Predicted transporter (major facilitator superfamily), at 95902 to 98475 11101 mRNA_2734: 11102 - K14779 DDX52, ROK1 ATP-dependent RNA helicase DDX52/ROK1, at 98768 to 101128 11102

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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95,055 + -0.8
95,164 - -0.3
95,167 - -1.3
95,169 + 2.4
95,177 + 0.0
95,190 + 1.0
95,247 + 2.3
95,285 - 2.4
95,352 + 0.4
95,461 + 11100 mRNA_2732 0.12 0.2
95,497 - 11100 mRNA_2732 0.26 0.1
95,508 - 11100 mRNA_2732 0.30 0.9
95,513 + 11100 mRNA_2732 0.32 -0.6
95,525 + 11100 mRNA_2732 0.36 -0.7
95,539 - 11100 mRNA_2732 0.42 0.4
95,552 + 11100 mRNA_2732 0.47 1.0
95,688 - 2.3
95,692 + -0.7
95,707 + 0.1
95,710 + 2.3
95,765 - -1.6
95,891 - 0.0
95,941 - -1.6
96,187 - 11101 mRNA_2733 0.11 0.7
96,190 - 11101 mRNA_2733 0.11 -0.2
96,215 - 11101 mRNA_2733 0.12 -0.0
96,682 + 11101 mRNA_2733 0.30 0.9
96,970 - 11101 mRNA_2733 0.41 0.8
97,330 - 11101 mRNA_2733 0.55 0.2
97,556 + 11101 mRNA_2733 0.64 0.8
97,561 + 11101 mRNA_2733 0.64 0.4
97,583 - 11101 mRNA_2733 0.65 0.6
97,706 + 11101 mRNA_2733 0.70 0.3
97,830 - 11101 mRNA_2733 0.75 0.1
97,920 - 11101 mRNA_2733 0.78 1.6
97,925 + 11101 mRNA_2733 0.79 0.6
97,928 - 11101 mRNA_2733 0.79 -0.3
97,958 - 11101 mRNA_2733 0.80 0.0
97,965 + 11101 mRNA_2733 0.80 -0.2
97,972 + 11101 mRNA_2733 0.80 -0.4
97,979 + 11101 mRNA_2733 0.81 0.2
97,986 + 11101 mRNA_2733 0.81 2.3
98,034 + 11101 mRNA_2733 0.83 1.2
98,248 - 0.6
98,251 + 1.0
98,450 + 0.4
98,582 + 0.6
98,709 + -0.3
98,839 + -0.5