Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2721

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2720: 11088 - Hypothetical Protein, at 76182 to 76700 11088 mRNA_2721: 11089 - BLAST metallophosphoesterase domain-containing protein [Muc..., at 76876 to 78981 11089 mRNA_2722: 11090 - KOG4117 Heat shock factor binding protein, at 79182 to 79739 11090

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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76,148 + 0.1
76,294 - 11088 mRNA_2720 0.22 -0.7
76,315 + 11088 mRNA_2720 0.26 0.4
76,317 - 11088 mRNA_2720 0.26 0.1
76,421 - 11088 mRNA_2720 0.46 -1.5
76,458 + 11088 mRNA_2720 0.53 0.5
76,459 - 11088 mRNA_2720 0.53 -0.0
76,460 - 11088 mRNA_2720 0.54 -1.1
76,468 + 11088 mRNA_2720 0.55 0.1
76,507 + 11088 mRNA_2720 0.63 -0.2
76,573 - 11088 mRNA_2720 0.75 1.2
76,605 - 11088 mRNA_2720 0.82 0.6
76,696 - 1.1
76,720 + 1.7
76,720 + -1.1
76,739 + 2.4
76,777 - -0.5
76,782 - 1.4
76,789 + 0.4
76,799 - 2.5
76,809 + 0.1
76,816 - 2.9
76,829 - 1.4
76,893 - 2.1
76,905 + 0.0
76,952 - 0.7
76,965 + 0.6
77,142 + 11089 mRNA_2721 0.13 -0.4
77,187 + 11089 mRNA_2721 0.15 1.4
77,189 + 11089 mRNA_2721 0.15 0.7
77,306 + 11089 mRNA_2721 0.20 0.3
77,360 + 11089 mRNA_2721 0.23 1.0
77,363 - 11089 mRNA_2721 0.23 -1.4
77,365 - 11089 mRNA_2721 0.23 -0.1
77,382 + 11089 mRNA_2721 0.24 0.8
77,597 - 11089 mRNA_2721 0.34 -0.2
78,080 + 11089 mRNA_2721 0.57 0.2
78,338 + 11089 mRNA_2721 0.69 -0.2
78,389 - 11089 mRNA_2721 0.72 0.6
78,518 - 11089 mRNA_2721 0.78 0.4
78,956 - 0.8
78,958 - -0.9
78,980 + 0.5
79,093 - -1.0
79,681 + 11090 mRNA_2722 0.89 -0.1
79,722 - 2.5