Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2718

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2717: 11085 - HMMPfam-Nitronate monooxygenase-PF03060,SUPERFAMILY--SSF51412, at 71439 to 72597 11085 mRNA_2718: 11086 - SUPERFAMILY--SSF50475, at 72649 to 73814 11086 mRNA_2719: 11087 - Hypothetical Protein, at 74043 to 75833 11087

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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71,843 - 11085 mRNA_2717 0.35 2.6
71,952 + 11085 mRNA_2717 0.44 0.9
72,350 + 11085 mRNA_2717 0.79 -1.8
72,407 - 11085 mRNA_2717 0.84 0.0
72,468 - 11085 mRNA_2717 0.89 0.8
72,536 + 0.1
72,536 + 0.5
72,547 - -0.6
72,556 + 1.2
72,563 + 1.1
72,669 + 1.4
72,837 - 11086 mRNA_2718 0.16 0.0
72,882 + 11086 mRNA_2718 0.20 -2.7
72,887 + 11086 mRNA_2718 0.20 0.6
72,887 + 11086 mRNA_2718 0.20 0.5
73,025 + 11086 mRNA_2718 0.32 -0.6
73,147 + 11086 mRNA_2718 0.43 0.3
73,399 + 11086 mRNA_2718 0.64 -0.5
73,415 + 11086 mRNA_2718 0.66 0.0
73,445 - 11086 mRNA_2718 0.68 0.5
73,452 - 11086 mRNA_2718 0.69 -0.3
73,538 + 11086 mRNA_2718 0.76 1.5
73,553 - 11086 mRNA_2718 0.78 1.0
73,583 + 11086 mRNA_2718 0.80 -1.2
73,697 - 11086 mRNA_2718 0.90 0.8
73,700 - 0.1
73,718 - -1.3
73,756 + 1.1
73,827 - 1.6
73,844 + 0.8
73,989 - -2.4
73,992 + 1.3
73,996 + 0.4
73,997 + 1.1
74,005 + -0.6
74,008 - -0.6
74,011 - 0.0
74,015 - 1.6
74,023 - 0.4
74,051 - 0.3
74,074 - -0.4
74,075 + 0.7
74,079 + 3.0
74,092 + 0.4
74,094 + 0.7
74,126 + 0.1
74,184 + -0.2
74,188 + 0.4
74,236 - 11087 mRNA_2719 0.11 2.1
74,242 - 11087 mRNA_2719 0.11 -1.4
74,246 + 11087 mRNA_2719 0.11 1.4
74,250 + 11087 mRNA_2719 0.12 1.1
74,252 + 11087 mRNA_2719 0.12 0.7
74,258 + 11087 mRNA_2719 0.12 -0.7
74,265 + 11087 mRNA_2719 0.12 0.6
74,267 + 11087 mRNA_2719 0.13 1.6
74,269 + 11087 mRNA_2719 0.13 0.7
74,390 - 11087 mRNA_2719 0.19 0.2
74,398 + 11087 mRNA_2719 0.20 -0.9
74,536 - 11087 mRNA_2719 0.28 0.7
74,538 + 11087 mRNA_2719 0.28 1.2
74,562 + 11087 mRNA_2719 0.29 0.6
74,643 + 11087 mRNA_2719 0.34 -3.0