Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2707

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2706: 11074 - HMMPfam-PLAC8 family-PF04749,TIGRFAM-A_thal_Cys_rich uncharacterized Cys-rich domain-TIGR01571, at 47300 to 48078 11074 mRNA_2707: 11075 - KOG0254 Predicted transporter (major facilitator superfamily), at 48524 to 50718 11075

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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47,582 + 11074 mRNA_2706 0.36 1.4
47,717 + 11074 mRNA_2706 0.54 0.8
47,950 - 11074 mRNA_2706 0.83 -1.3
47,966 + 11074 mRNA_2706 0.85 2.5
48,263 + 1.6
48,325 - -0.0
48,540 + 0.3
48,700 - 1.3
49,112 + 11075 mRNA_2707 0.27 -2.0
49,249 + 11075 mRNA_2707 0.33 1.2
49,360 + 11075 mRNA_2707 0.38 0.7
49,380 - 11075 mRNA_2707 0.39 0.7
49,408 + 11075 mRNA_2707 0.40 0.8
49,687 - 11075 mRNA_2707 0.53 1.0
49,700 - 11075 mRNA_2707 0.54 0.6
49,706 + 11075 mRNA_2707 0.54 0.9
49,810 - 11075 mRNA_2707 0.59 -0.3
49,967 + 11075 mRNA_2707 0.66 0.4
50,124 - 11075 mRNA_2707 0.73 0.8
50,294 - 11075 mRNA_2707 0.81 0.2
50,377 - 11075 mRNA_2707 0.84 2.0
50,406 + 11075 mRNA_2707 0.86 0.7
50,429 - 11075 mRNA_2707 0.87 0.7
50,442 - 11075 mRNA_2707 0.87 0.4
50,546 - 2.8
50,552 - 1.4
50,701 - 1.6
50,812 - 0.7
50,826 - 0.8
50,855 - 0.0
50,856 - 1.6
50,857 - 0.5
50,861 + 1.0
50,874 - -0.1
50,875 - -0.6
50,877 - -0.3
50,912 + 1.9
51,005 - 2.0
51,018 - -0.2
51,025 + 0.3
51,027 + 0.3
51,043 + 1.1
51,050 + -0.3
51,050 + 0.7
51,058 + 0.0
51,062 + 3.5
51,080 - 1.3
51,086 - 0.2
51,116 - -1.2
51,171 - -1.0
51,183 - 0.0
51,188 + 0.0
51,190 + -0.7
51,346 + -1.3
51,489 - 0.6
51,522 - 0.7
51,711 + 2.5