Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2701

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2701: 11069 - HMMPfam-Glycosyltransferase sugar-binding region containing DXD motif-PF04488,SUPERFAMILY--SSF53448, at 37743 to 40782 11069 mRNA_2702: 11070 - BLAST TRAF-like [Xanthophyllomyces dendrorhous], at 41116 to 42334 11070

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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36,794 - 0.4
37,069 - 1.5
37,098 + -0.4
37,101 - 0.1
37,228 + 1.2
37,284 + 1.1
37,404 + 0.1
37,414 + 0.3
37,418 + -1.6
37,421 + -0.9
37,568 + 2.2
37,692 + 0.1
39,614 + 11069 mRNA_2701 0.62 2.6
40,982 + -0.5
41,019 + 0.7
41,025 + 0.7
41,027 - -0.3
41,034 - -0.3
41,056 - 0.0
41,082 - 1.7
41,198 + 0.1
41,316 + 11070 mRNA_2702 0.16 1.6
41,582 - 11070 mRNA_2702 0.38 -0.4
41,677 + 11070 mRNA_2702 0.46 -0.1
41,716 + 11070 mRNA_2702 0.49 -2.0
41,746 - 11070 mRNA_2702 0.52 0.3