Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2694

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2693: 11061 - K18470 ARHGAP1, CDC42GAP Rho GTPase-activating protein 1, at 18614 to 20530 11061 mRNA_2694: 11062 - HMMPfam-BTB/POZ domain-PF00651,ProSiteProfiles-BTB domain profile.-PS50097,SUPERFAMILY--SSF49599,SUPERFAMILY--SSF54695, at 20926 to 22511 11062

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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20,002 + 11061 mRNA_2693 0.72 -1.1
20,007 + 11061 mRNA_2693 0.73 1.6
20,031 - 11061 mRNA_2693 0.74 -0.6
20,074 + 11061 mRNA_2693 0.76 0.3
20,079 + 11061 mRNA_2693 0.76 0.0
20,123 + 11061 mRNA_2693 0.79 0.9
20,310 - 11061 mRNA_2693 0.88 -0.3
20,466 - 0.9
20,610 - 1.0
20,614 - 0.6
20,616 - 0.7
20,617 - -0.5
20,628 + 2.2
20,664 + -0.2
20,707 + 3.3
20,724 + -1.1
20,765 - 1.0
20,784 - -0.1
20,792 - 2.2
20,922 - 0.8
20,923 + 1.7
20,930 + -0.7
20,935 + -2.0
20,959 - 0.3
20,959 - 0.8
20,960 - -1.1
20,960 - 2.9
20,966 + 2.0
20,972 - -0.8
20,979 + 0.6
21,305 - 11062 mRNA_2694 0.24 -0.7
21,312 + 11062 mRNA_2694 0.24 0.7
21,358 + 11062 mRNA_2694 0.27 0.1
21,372 - 11062 mRNA_2694 0.28 0.8
21,834 - 11062 mRNA_2694 0.57 0.3
22,077 + 11062 mRNA_2694 0.73 3.5
22,194 + 11062 mRNA_2694 0.80 2.4
22,197 - 11062 mRNA_2694 0.80 -0.1
22,234 - 11062 mRNA_2694 0.82 1.3
22,318 + 11062 mRNA_2694 0.88 -1.1
22,460 - 1.0
22,535 + -0.5
22,547 - 0.1
22,584 + 1.1
22,644 - 0.1
22,653 - -0.4
22,664 + 0.1
22,664 + 0.1
22,669 - 0.8
22,682 + 0.1
22,826 - -0.6
22,834 + 0.8
22,975 - -1.5
22,975 - -1.9
23,076 + -1.9
23,235 - 1.0
23,391 - -2.4
23,404 - 1.8
23,406 - -0.7
23,412 - 1.4
23,429 + 2.3
23,435 - -0.2