Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2686

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2686: 11054 - Interpro Fungal potassium channel 0, at 510 to 3087 11054 mRNA_2687: 11055 - K16542 CDK5RAP2 CDK5 regulatory subunit-associated protein 2, at 3683 to 8144 11055

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1 + 0.0
28 + 1.2
28 + 3.3
37 + 0.4
37 + -0.5
38 + 0.5
44 + 0.0
48 - 0.9
49 + 0.9
49 + -1.2
49 + 0.1
49 + -0.1
49 + 0.9
49 + 1.4
49 - 0.5
52 + 0.5
54 - 0.6
54 - 1.0
58 + 0.1
62 + 0.8
70 - 0.6
73 + 0.0
74 - 1.9
74 + 0.2
112 - -0.8
120 - -0.1
138 + -0.9
142 + -1.9
142 + 0.2
142 + 0.8
144 + -0.8
145 - 0.8
147 + 1.0
152 + 4.2
159 + 1.5
159 - 1.6
163 + 0.2
169 - 1.9
170 + 1.0
171 - -0.7
173 + 0.1
175 - 0.6
176 + 2.4
177 + -1.3
183 + -0.9
193 + -0.9
205 + 0.7
231 + 2.7
232 + 1.6
235 - -1.9
252 - 2.8
259 + -0.1
259 + 1.9
259 + 0.3
262 - -0.1
269 + 0.5
273 + -0.7
275 - 0.9
289 + 3.1
299 + 1.3
312 - -0.3
339 + -1.1
352 + 0.4
357 + -0.2
358 + -0.1
368 - 1.4
417 - -0.7
429 + -0.3
434 + 1.0
445 + 3.0
462 + 0.7
462 + 0.8
502 + -0.3
529 - 1.7
540 - 0.1
561 + -1.3
584 + -0.5
584 - 2.8
584 + -1.0
633 + -0.3
636 + 1.1
646 + 0.2
703 - 0.8
736 - -0.9
772 - 11054 mRNA_2686 0.10 1.2
845 - 11054 mRNA_2686 0.13 -0.6
871 + 11054 mRNA_2686 0.14 2.8
911 + 11054 mRNA_2686 0.16 -0.3
919 - 11054 mRNA_2686 0.16 -1.1
922 + 11054 mRNA_2686 0.16 0.3
937 - 11054 mRNA_2686 0.17 3.1
946 - 11054 mRNA_2686 0.17 0.5
1,039 + 11054 mRNA_2686 0.21 2.1
1,042 - 11054 mRNA_2686 0.21 0.2
1,056 + 11054 mRNA_2686 0.21 2.1
1,056 + 11054 mRNA_2686 0.21 -0.7
1,059 - 11054 mRNA_2686 0.21 0.5
1,059 - 11054 mRNA_2686 0.21 0.7
1,079 + 11054 mRNA_2686 0.22 1.5
1,089 + 11054 mRNA_2686 0.22 0.0
1,090 - 11054 mRNA_2686 0.22 0.9
1,099 - 11054 mRNA_2686 0.23 1.3
1,116 - 11054 mRNA_2686 0.24 0.1
1,219 - 11054 mRNA_2686 0.28 1.0
1,230 + 11054 mRNA_2686 0.28 1.8
1,258 - 11054 mRNA_2686 0.29 -0.4
1,270 - 11054 mRNA_2686 0.29 -0.9
1,272 + 11054 mRNA_2686 0.30 1.6
1,324 + 11054 mRNA_2686 0.32 -0.2
1,351 + 11054 mRNA_2686 0.33 -1.5
1,464 + 11054 mRNA_2686 0.37 0.7
1,508 + 11054 mRNA_2686 0.39 -0.2
1,514 - 11054 mRNA_2686 0.39 3.0
1,611 + 11054 mRNA_2686 0.43 -0.2
1,642 + 11054 mRNA_2686 0.44 0.5
1,671 + 11054 mRNA_2686 0.45 4.0
1,680 + 11054 mRNA_2686 0.45 1.0
1,683 - 11054 mRNA_2686 0.46 1.5
1,684 + 11054 mRNA_2686 0.46 0.2
1,699 + 11054 mRNA_2686 0.46 -0.6
1,836 + 11054 mRNA_2686 0.51 1.1
1,912 + 11054 mRNA_2686 0.54 1.0
1,961 - 11054 mRNA_2686 0.56 1.0
2,068 - 11054 mRNA_2686 0.60 0.8
2,071 - 11054 mRNA_2686 0.61 0.9
2,079 + 11054 mRNA_2686 0.61 1.3
2,096 - 11054 mRNA_2686 0.62 -1.1
2,112 + 11054 mRNA_2686 0.62 0.4
2,128 + 11054 mRNA_2686 0.63 2.4
2,140 + 11054 mRNA_2686 0.63 -2.2
2,141 - 11054 mRNA_2686 0.63 0.1
2,158 + 11054 mRNA_2686 0.64 -0.2
2,196 + 11054 mRNA_2686 0.65 0.8
2,238 + 11054 mRNA_2686 0.67 0.3
2,250 - 11054 mRNA_2686 0.67 0.2
2,271 + 11054 mRNA_2686 0.68 1.5
2,404 - 11054 mRNA_2686 0.73 0.5
2,419 + 11054 mRNA_2686 0.74 0.2
2,442 - 11054 mRNA_2686 0.75 -1.1
2,444 - 11054 mRNA_2686 0.75 2.5
2,534 - 11054 mRNA_2686 0.79 -0.8
2,547 - 11054 mRNA_2686 0.79 -1.4
2,564 + 11054 mRNA_2686 0.80 -0.2
2,685 - 11054 mRNA_2686 0.84 -1.6
2,806 + 11054 mRNA_2686 0.89 -0.3
2,806 - 11054 mRNA_2686 0.89 0.2
2,814 - 11054 mRNA_2686 0.89 0.8
2,938 + 2.4
2,971 + 1.2
2,984 - 0.9
3,056 - -0.7
3,090 + 1.8
3,127 + -0.9
3,135 - -1.9
3,141 + -0.5
3,282 + -0.2
3,380 + -0.3
3,409 - 1.0