Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2671

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2670: 11038 - SUPERFAMILY--SSF52058, at 724183 to 725340 11038 mRNA_2671: 11039 - K00111 glpA, glpD glycerol-3-phosphate dehydrogenase, at 726293 to 729723 11039 mRNA_2672: 11040 - K20032 ZDHHC13_17, HIP14 palmitoyltransferase ZDHHC13/17, at 730581 to 733538 11040

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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725,372 + -2.2
725,398 + 0.5
725,400 + 0.7
725,457 - 2.8
725,590 + 1.1
725,602 + -0.8
725,745 - 0.1
725,753 + 0.3
725,765 - 1.6
725,773 + 1.2
725,774 - 1.3
725,783 + 2.5
725,800 + -0.5
725,807 + 0.7
725,814 - 0.2
725,843 - -0.7
725,879 + 1.4
725,879 + 1.1
726,006 + 1.7
726,029 + -2.8
726,045 + 0.9
726,203 + 0.4
726,748 - 11039 mRNA_2671 0.13 -0.4
727,041 + 11039 mRNA_2671 0.22 -1.2
727,099 + 11039 mRNA_2671 0.23 -0.3
727,186 - 11039 mRNA_2671 0.26 2.8
727,484 + 11039 mRNA_2671 0.35 -1.2
727,816 - 11039 mRNA_2671 0.44 -1.3
727,933 + 11039 mRNA_2671 0.48 0.6
728,039 - 11039 mRNA_2671 0.51 -0.3
728,053 - 11039 mRNA_2671 0.51 1.0
728,078 + 11039 mRNA_2671 0.52 1.6
728,416 + 11039 mRNA_2671 0.62 1.0
728,511 - 11039 mRNA_2671 0.65 -0.1
728,802 - 11039 mRNA_2671 0.73 0.4
729,527 + -1.4
729,665 + -0.3
729,703 + 1.3
729,785 - 0.9
729,799 + -0.5
729,956 - -1.0
729,959 - 2.7
729,968 - 0.7
729,969 + -1.2
729,970 + 0.4
729,999 - -0.7
730,001 - -0.3
730,013 + 0.4
730,013 + -1.5
730,087 - 0.2
730,112 - -0.5
730,119 + 1.2
730,122 - -1.7
730,144 - 1.2
730,146 - 1.3
730,146 - 1.4
730,147 + 0.4
730,152 - 1.1
730,152 + -0.8
730,167 + 0.7
730,172 - -1.5
730,185 + -0.5
730,213 + 1.0
730,213 + 0.2
730,287 + 0.1
730,300 + -0.1
730,309 + 1.4
730,323 + 0.2
730,330 - -1.3
730,340 + 2.3
730,470 - 1.2
730,472 - 0.1
730,473 - 0.7
730,476 - 0.3
730,484 - -1.8
730,497 + -1.4
730,504 + -0.8
730,505 + 2.6
730,507 - 1.3
730,618 - -0.1