Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2667

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2666: 11034 - HMMPfam-Lipase (class 3)-PF01764,SUPERFAMILY--SSF53474, at 715009 to 717266 11034 mRNA_2667: 11035 - K05535 MNN2 alpha 1,2-mannosyltransferase, at 717860 to 720887 11035 mRNA_2668: 11036 - K00049 GRHPR glyoxylate/hydroxypyruvate reductase, at 720997 to 722358 11036

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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716,894 - 11034 mRNA_2666 0.83 0.1
716,924 - 11034 mRNA_2666 0.85 -0.1
716,953 - 11034 mRNA_2666 0.86 0.1
717,048 - 2.0
717,069 + 0.4
717,107 - 0.4
717,216 + 1.1
717,226 - -1.7
717,229 - -2.5
717,230 + -1.4
717,231 - -0.5
717,243 - -0.3
717,243 - 1.0
717,245 - 1.1
717,245 - 0.7
717,248 + 1.1
717,248 - 1.6
717,250 - -0.4
717,251 + -0.6
717,253 + -0.3
717,258 + -2.2
717,268 - 0.7
717,272 + -0.9
717,275 - -2.3
717,279 + -3.0
717,279 + -0.2
717,279 + 1.2
717,303 + -1.4
717,326 + 0.3
717,354 + 0.4
717,426 + 0.4
717,438 - 0.8
717,443 + -0.3
717,447 + 1.5
717,448 - 0.2
717,449 + -0.7
717,456 - -0.6
717,456 - 0.9
717,456 - -0.5
717,466 + -0.0
717,595 - 0.4
717,597 - -0.8
717,622 + 0.6
717,633 + 2.2
717,645 - -0.6
717,649 - 1.8
717,656 + -0.8
717,668 - -0.4
717,791 + 1.2
717,798 - 0.6
717,807 + 0.5
717,809 + 0.0
717,915 + 2.2
718,111 + 3.5
718,226 - 11035 mRNA_2667 0.12 0.5
718,370 - 11035 mRNA_2667 0.17 0.2
718,466 - 11035 mRNA_2667 0.20 -0.3
718,509 + 11035 mRNA_2667 0.21 0.8
718,688 - 11035 mRNA_2667 0.27 -0.1
718,693 + 11035 mRNA_2667 0.28 -2.0
719,239 - 11035 mRNA_2667 0.46 1.0
719,342 + 11035 mRNA_2667 0.49 -0.3
720,083 + 11035 mRNA_2667 0.73 -1.0
720,145 - 11035 mRNA_2667 0.75 -0.5
720,168 - 11035 mRNA_2667 0.76 0.6
720,462 + 11035 mRNA_2667 0.86 1.7
720,574 - 11035 mRNA_2667 0.90 0.0
720,883 - 2.3
720,908 - 2.1
720,909 + 0.2
720,938 - 3.2
721,029 - 0.5
721,050 + -0.5
721,393 + 11036 mRNA_2668 0.29 1.7
721,509 + 11036 mRNA_2668 0.38 0.7
721,556 + 11036 mRNA_2668 0.41 -1.2
721,691 - 11036 mRNA_2668 0.51 -0.1
721,694 + 11036 mRNA_2668 0.51 0.5