Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2656

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2655: 11023 - HMMPfam-Protein of unknown function (DUF1479)-PF07350,SUPERFAMILY--SSF51197, at 688711 to 690606 11023 mRNA_2656: 11024 - KOG3417 Ras1 guanine nucleotide exchange factor, at 690754 to 695161 11024 mRNA_2657: 11025 - K02155 ATPeV0C, ATP6L V-type H+-transporting ATPase 16kDa proteolipid subunit, at 695645 to 696729 11025

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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689,924 - 11023 mRNA_2655 0.64 -2.7
690,135 - 11023 mRNA_2655 0.75 1.3
690,446 - -1.0
690,581 + 0.2
690,890 + 0.6
691,054 - -0.8
691,308 + 11024 mRNA_2656 0.13 1.2
691,348 + 11024 mRNA_2656 0.13 -1.6
691,474 + 11024 mRNA_2656 0.16 0.9
691,511 + 11024 mRNA_2656 0.17 0.1
691,599 - 11024 mRNA_2656 0.19 0.3
691,610 - 11024 mRNA_2656 0.19 -0.4
691,760 + 11024 mRNA_2656 0.23 0.2
691,785 + 11024 mRNA_2656 0.23 1.1
691,873 - 11024 mRNA_2656 0.25 1.1
691,901 - 11024 mRNA_2656 0.26 2.5
692,059 + 11024 mRNA_2656 0.30 -0.6
692,392 - 11024 mRNA_2656 0.37 0.3
692,486 + 11024 mRNA_2656 0.39 -1.5
692,546 + 11024 mRNA_2656 0.41 0.1
692,590 + 11024 mRNA_2656 0.42 -0.2
692,701 - 11024 mRNA_2656 0.44 -1.1
692,721 - 11024 mRNA_2656 0.45 0.5
692,822 - 11024 mRNA_2656 0.47 0.4
693,378 + 11024 mRNA_2656 0.60 0.3
693,401 + 11024 mRNA_2656 0.60 0.7
693,748 - 11024 mRNA_2656 0.68 -1.1
693,749 + 11024 mRNA_2656 0.68 0.2
693,867 + 11024 mRNA_2656 0.71 -0.2
693,885 + 11024 mRNA_2656 0.71 -0.1
694,341 + 11024 mRNA_2656 0.81 -0.5
694,558 + 11024 mRNA_2656 0.86 0.8
694,873 - 0.2
695,134 - 0.3
695,154 - 0.6
695,157 - -0.0
695,157 + -0.8
695,287 - -2.1
695,289 + 0.6
695,300 - -1.2
695,315 - 2.2
695,429 - 0.1
695,465 - 2.2
695,481 - -0.0
695,491 - 1.0
695,495 + 2.1
695,496 - -1.2
695,498 + -0.1
695,503 + -0.4
695,598 - 0.3
695,601 - 0.3
695,603 - 0.4