Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2638

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2637: 11005 - HMMPfam-Sulphur transport-PF04143,HMMPfam-Domain of unknown function (DUF4341)-PF14241, at 649432 to 650669 11005 mRNA_2638: 11006 - SMART-heat shock factor-SM00415, at 650946 to 653673 11006 mRNA_2639: 11007 - HMMPfam-Glycosyl hydrolase family 26-PF02156,SUPERFAMILY--SSF51445, at 654513 to 656042 11007

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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649,951 - 11005 mRNA_2637 0.42 0.2
650,041 - 11005 mRNA_2637 0.49 1.9
650,060 - 11005 mRNA_2637 0.51 -1.1
650,181 - 11005 mRNA_2637 0.61 0.7
650,228 - 11005 mRNA_2637 0.64 0.5
650,301 + 11005 mRNA_2637 0.70 3.5
650,561 - -0.4
650,687 + 0.1
650,963 + -0.1
651,109 - 1.5
651,109 + 1.3
651,243 - 11006 mRNA_2638 0.11 0.0
651,295 - 11006 mRNA_2638 0.13 2.1
651,403 - 11006 mRNA_2638 0.17 0.5
651,403 - 11006 mRNA_2638 0.17 -0.9
651,967 - 11006 mRNA_2638 0.37 0.5
651,984 + 11006 mRNA_2638 0.38 0.4
652,271 - 11006 mRNA_2638 0.49 0.3
652,714 - 11006 mRNA_2638 0.65 2.7
652,741 + 11006 mRNA_2638 0.66 0.5
653,277 + 11006 mRNA_2638 0.85 -0.3
653,435 - 0.1
653,580 + -0.9
653,757 - -0.9
653,899 - 0.9
653,900 + -2.6
653,904 - -2.4
654,036 + 0.5
654,325 - 0.8
654,327 - -1.1
654,330 - -0.0
654,346 + -0.4
654,353 - 0.5
654,379 + -0.1
654,385 - -0.3
654,387 + -0.0
654,389 + 0.5
654,390 + -1.3
654,392 + 0.6
654,393 - 1.2
654,393 - -0.3
654,393 + -0.2
654,394 - 1.7
654,395 - 0.5
654,396 + 2.4
654,397 + 0.2
654,398 + 2.5
654,413 - 0.3
654,414 + 0.3
654,419 + -1.5
654,427 + -0.3
654,429 - 1.7