Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2636

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2635: 11003 - KOG2615 Permease of the major facilitator superfamily, at 644639 to 646229 11003 mRNA_2636: 11004 - K01303 APEH acylaminoacyl-peptidase, at 646481 to 649252 11004 mRNA_2637: 11005 - HMMPfam-Sulphur transport-PF04143,HMMPfam-Domain of unknown function (DUF4341)-PF14241, at 649432 to 650669 11005

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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645,634 - 11003 mRNA_2635 0.63 0.2
645,787 - 11003 mRNA_2635 0.72 -0.0
645,908 - 11003 mRNA_2635 0.80 0.3
645,972 - 11003 mRNA_2635 0.84 1.3
646,089 - -1.3
646,189 + 0.6
646,220 + 1.7
646,408 + -0.6
646,424 - 1.6
646,534 - 1.2
646,573 + 1.0
646,576 - 0.3
646,580 + 2.2
646,664 + 0.9
646,811 + 11004 mRNA_2636 0.12 2.5
646,812 - 11004 mRNA_2636 0.12 1.8
646,826 - 11004 mRNA_2636 0.12 1.8
646,995 - 11004 mRNA_2636 0.19 0.0
646,995 + 11004 mRNA_2636 0.19 -1.7
647,213 - 11004 mRNA_2636 0.26 3.3
647,214 + 11004 mRNA_2636 0.26 -1.0
647,214 + 11004 mRNA_2636 0.26 0.4
647,424 - 11004 mRNA_2636 0.34 0.2
647,448 - 11004 mRNA_2636 0.35 -0.1
647,553 - 11004 mRNA_2636 0.39 2.5
647,582 - 11004 mRNA_2636 0.40 -0.7
647,679 - 11004 mRNA_2636 0.43 -0.2
647,803 + 11004 mRNA_2636 0.48 0.7
648,268 - 11004 mRNA_2636 0.64 -0.4
648,551 - 11004 mRNA_2636 0.75 0.4
648,577 + 11004 mRNA_2636 0.76 2.5
648,583 - 11004 mRNA_2636 0.76 -2.7
648,664 + 11004 mRNA_2636 0.79 0.7
648,710 - 11004 mRNA_2636 0.80 1.8
648,715 + 11004 mRNA_2636 0.81 0.5
648,995 - 1.0
649,000 - 0.6
649,005 - 0.2
649,031 + 0.9
649,124 - -0.2
649,157 + -0.3
649,157 + -1.9
649,206 + -0.2
649,319 + -0.1
649,335 + 1.1
649,340 + 0.3
649,340 - -0.5
649,342 - -0.1
649,358 + 0.4
649,372 + 2.7
649,384 + 1.3
649,531 + -0.7
649,625 - 11005 mRNA_2637 0.16 -0.1
649,629 + 11005 mRNA_2637 0.16 -0.1
649,756 - 11005 mRNA_2637 0.26 0.0
649,777 - 11005 mRNA_2637 0.28 0.1
649,781 + 11005 mRNA_2637 0.28 0.4
649,786 + 11005 mRNA_2637 0.29 0.0
649,794 + 11005 mRNA_2637 0.29 -1.0
649,951 - 11005 mRNA_2637 0.42 0.2
650,041 - 11005 mRNA_2637 0.49 1.9
650,060 - 11005 mRNA_2637 0.51 -1.1
650,181 - 11005 mRNA_2637 0.61 0.7
650,228 - 11005 mRNA_2637 0.64 0.5