Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2622

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2621: 10989 - K01711 gmd, GMDS GDPmannose 4,6-dehydratase, at 611391 to 613373 10989 mRNA_2622: 10990 - BLAST expressed protein [Schizophyllum commune H4-8], at 613719 to 614794 10990 mRNA_2623: 10991 - K00306 PIPOX sarcosine oxidase / L-pipecolate oxidase, at 615105 to 616887 10991

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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612,757 - 10989 mRNA_2621 0.69 0.8
612,769 - 10989 mRNA_2621 0.69 -0.1
612,773 - 10989 mRNA_2621 0.70 0.7
613,053 - 10989 mRNA_2621 0.84 1.4
613,083 + 10989 mRNA_2621 0.85 0.0
613,213 - 0.3
613,369 - -0.4
613,463 - -0.8
613,465 - 3.2
613,466 + 0.2
613,480 - 1.9
613,514 + 2.1
613,514 - -0.1
613,516 - -2.0
613,521 + -0.9
613,530 + 2.2
613,658 + 0.0
613,788 - -0.8
613,865 + 10990 mRNA_2622 0.14 -0.3
613,946 - 10990 mRNA_2622 0.21 0.5
614,053 + 10990 mRNA_2622 0.31 -1.3
614,539 - 10990 mRNA_2622 0.76 0.0
614,679 - 10990 mRNA_2622 0.89 3.3
614,828 + -0.4
614,845 + 0.1
614,968 - 0.6
615,035 + 0.0
615,040 + 1.5
615,141 + 1.9
615,147 - 0.7
615,158 + -0.9
615,160 - -0.4
615,166 - 0.4
615,174 + 1.7
615,313 - 10991 mRNA_2623 0.12 0.6
615,351 + 10991 mRNA_2623 0.14 1.8
615,470 + 10991 mRNA_2623 0.20 -2.9
615,479 - 10991 mRNA_2623 0.21 0.6
615,739 - 10991 mRNA_2623 0.36 1.3
615,764 + 10991 mRNA_2623 0.37 0.5
615,766 + 10991 mRNA_2623 0.37 -2.1