Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2616

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2615: 10983 - K14775 UTP30, RSL1D1 ribosome biogenesis protein UTP30, at 602494 to 603879 10983 mRNA_2616: 10984 - KOG4076 Regulator of ATP-sensitive K+ channels Alpha-endosulfine/ARPP-19 and related cAMP-regulated phosphoproteins, at 604328 to 604979 10984 mRNA_2617: 10985 - HMMPfam-Carbonic anhydrase-PF00484,SMART-Carbonic anhydrase-SM00947,SUPERFAMILY--SSF53056, at 605466 to 606411 10985

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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603,935 + 0.4
603,941 + -0.4
603,944 + 1.7
603,991 + -0.3
604,007 + 2.0
604,112 - 0.2
604,128 + -0.9
604,271 + -0.7
604,542 - 10984 mRNA_2616 0.33 -2.7
604,663 - 10984 mRNA_2616 0.51 0.8
604,703 - 10984 mRNA_2616 0.58 0.2
604,716 + 10984 mRNA_2616 0.60 -0.3
604,891 + 10984 mRNA_2616 0.86 -0.8
604,960 + 1.4
604,984 - 2.1
605,013 - 2.1
605,027 - -0.2
605,029 + -0.4
605,030 - 1.1
605,153 - 0.4
605,163 - 2.9
605,166 + -1.2
605,169 - 1.0
605,177 - 0.2
605,182 + 0.2
605,183 + 0.4
605,213 + 0.4
605,314 + 0.5
605,314 + 0.5
605,317 + 0.4
605,750 + 10985 mRNA_2617 0.30 -0.5
605,920 - 10985 mRNA_2617 0.48 0.7