Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2611

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2610: 10978 - HMMPfam-OsmC-like protein-PF02566,SUPERFAMILY--SSF82784,TIGRFAM-organ_hyd_perox peroxiredoxin, Ohr subfamily-TIGR03561, at 590070 to 590802 10978 mRNA_2611: 10979 - BLAST phosphatase iiic [Colletotrichum gloeosporioides ..., at 591297 to 591714 10979 mRNA_2612: 10980 - HMMPfam-Protein kinase C terminal domain-PF00433, at 591842 to 594740 10980

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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590,403 - 10978 mRNA_2610 0.45 0.7
590,557 + 10978 mRNA_2610 0.66 0.8
590,692 - 10978 mRNA_2610 0.85 0.6
590,845 - -0.0
590,848 + 0.5
590,861 + 0.1
590,869 + 0.7
590,888 - 2.4
591,000 + 0.2
591,002 + 3.7
591,134 + -0.0
591,150 - 0.4
591,345 - 10979 mRNA_2611 0.11 0.3
591,453 + 10979 mRNA_2611 0.37 0.3
592,171 + 10980 mRNA_2612 0.11 0.5
592,304 - 10980 mRNA_2612 0.16 -0.0
592,306 + 10980 mRNA_2612 0.16 0.7
592,327 - 10980 mRNA_2612 0.17 1.0
592,328 + 10980 mRNA_2612 0.17 1.1