Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2597

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2596: 10964 - K00966 GMPP mannose-1-phosphate guanylyltransferase, at 561715 to 563654 10964 mRNA_2597: 10965 - Hypothetical Protein, at 564104 to 565284 10965 mRNA_2598: 10966 - Hypothetical Protein, at 566184 to 566984 10966

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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563,297 + 10964 mRNA_2596 0.82 -0.3
563,423 - 10964 mRNA_2596 0.88 -1.3
563,572 + 3.1
563,718 - 0.3
563,736 - 2.0
563,758 + 0.3
563,821 + 0.6
563,861 + 0.2
563,866 - 3.1
563,894 - 1.9
563,894 - 1.9
563,904 + -0.7
563,915 - 0.7
563,953 - 0.1
563,991 - 0.1
564,023 + -1.2
564,037 - -0.4
564,042 - 1.2
564,064 + 0.7
564,108 + 0.4
564,200 - -1.8
564,208 - -0.5
564,209 - 0.6
564,288 - 10965 mRNA_2597 0.16 0.9
564,351 - 10965 mRNA_2597 0.21 -0.3
564,355 - 10965 mRNA_2597 0.21 0.7
564,357 + 10965 mRNA_2597 0.21 0.6
564,402 - 10965 mRNA_2597 0.25 -1.5
564,481 + 10965 mRNA_2597 0.32 1.1
564,508 + 10965 mRNA_2597 0.34 0.9
564,780 - 10965 mRNA_2597 0.57 0.6
565,072 - 10965 mRNA_2597 0.82 0.4
565,099 - 10965 mRNA_2597 0.84 0.1
565,106 - 10965 mRNA_2597 0.85 -1.6
565,226 + 1.0
565,290 - -0.6
565,374 + 1.3
565,408 + -0.0
565,572 + 0.3
565,804 + 1.6
565,918 - 0.5
566,036 - 1.9
566,042 - -0.5
566,047 - 0.7
566,073 - 0.6
566,076 - 0.3
566,077 - 0.4
566,084 + 0.2
566,085 - 0.2
566,086 + 1.2
566,096 + 0.0
566,100 - -1.5
566,100 - -0.8
566,100 - -1.3
566,102 + -1.3
566,103 + 0.8
566,103 + 1.4
566,116 - -0.5
566,117 - 0.7
566,120 + 0.3
566,126 - 1.6
566,128 - -0.7
566,130 + -0.1
566,132 - 1.4
566,135 + -0.4
566,137 - 0.1
566,146 + -0.7
566,147 + 1.3
566,148 - 0.7
566,157 + 0.9
566,258 + 0.8
566,272 - 10966 mRNA_2598 0.11 -0.8
566,278 + 10966 mRNA_2598 0.12 0.6