Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2594

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2593: 10961 - K15115 SLC25A32, MFT solute carrier family 25 (mitochondrial folate transporter), member 32, at 554356 to 555895 10961 mRNA_2594: 10962 - K12200 PDCD6IP, ALIX, RIM20 programmed cell death 6-interacting protein, at 556139 to 559559 10962 mRNA_2595: 10963 - K14012 SHP1, UBX1, NSFL1C UBX domain-containing protein 1, at 559652 to 561565 10963

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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555,915 - 0.0
556,039 - 1.1
556,192 - 0.5
556,214 - -1.1
556,264 + 2.4
556,486 - 10962 mRNA_2594 0.10 -0.6
556,804 + 10962 mRNA_2594 0.19 0.1
556,943 - 10962 mRNA_2594 0.24 0.2
556,945 - 10962 mRNA_2594 0.24 -3.9
556,987 + 10962 mRNA_2594 0.25 1.1
557,055 - 10962 mRNA_2594 0.27 0.6
557,055 + 10962 mRNA_2594 0.27 0.1
557,319 - 10962 mRNA_2594 0.34 0.2
557,431 + 10962 mRNA_2594 0.38 0.5
557,558 - 10962 mRNA_2594 0.41 -0.8
557,613 - 10962 mRNA_2594 0.43 0.2
557,633 + 10962 mRNA_2594 0.44 0.7
557,646 - 10962 mRNA_2594 0.44 0.8
558,069 + 10962 mRNA_2594 0.56 -0.4
558,709 + 10962 mRNA_2594 0.75 0.6
559,284 + 1.6
559,287 - 1.6
559,588 - -2.7
559,589 - 0.0
559,590 - 1.5
560,057 - 10963 mRNA_2595 0.21 0.7
560,065 - 10963 mRNA_2595 0.22 2.0