Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2580

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2579: 10947 - K10597 UBE4B, UFD2 ubiquitin conjugation factor E4 B, at 486195 to 490612 10947 mRNA_2580: 10948 - SUPERFAMILY--SSF52266, at 490712 to 492348 10948 mRNA_2581: 10949 - K06096 VAPA vesicle-associated membrane protein-associated protein A, at 492942 to 494422 10949

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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489,796 + 10947 mRNA_2579 0.82 -0.5
490,158 + 10947 mRNA_2579 0.90 0.5
490,216 - 1.2
490,720 - 2.3
490,732 - -0.4
490,734 + 2.5
490,737 - 0.6
490,749 + -0.0
490,750 + 2.8
490,753 - 1.9
490,824 - 2.8
490,845 + 1.3
491,121 - 10948 mRNA_2580 0.25 0.3
491,194 - 10948 mRNA_2580 0.29 0.4
491,387 - 10948 mRNA_2580 0.41 0.3
491,425 - 10948 mRNA_2580 0.44 0.3
491,501 - 10948 mRNA_2580 0.48 0.3
491,582 + 10948 mRNA_2580 0.53 -1.9
491,833 - 10948 mRNA_2580 0.68 0.8
491,849 - 10948 mRNA_2580 0.69 3.6
491,855 + 10948 mRNA_2580 0.70 0.5
492,042 + 10948 mRNA_2580 0.81 2.0
492,146 - 10948 mRNA_2580 0.88 1.8
492,187 - -0.0
492,204 - -0.1
492,286 - 1.6
492,300 - 1.4
492,595 + -0.7
492,607 + 3.5
492,609 - 2.0
492,614 + 0.0
492,630 + 1.7
492,657 - -1.6
492,672 - 1.7
492,729 + -0.0
492,762 + 0.3
492,766 - -1.2
492,772 + 1.1
492,775 - 0.3
492,781 - 0.9
492,784 + 1.8
492,799 - -1.7
492,807 + 1.2
492,851 - 0.4
492,930 + 0.4