Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2579

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2578: 10946 - KOG3574 Acetyl-CoA transporter, at 483636 to 486060 10946 mRNA_2579: 10947 - K10597 UBE4B, UFD2 ubiquitin conjugation factor E4 B, at 486195 to 490612 10947 mRNA_2580: 10948 - SUPERFAMILY--SSF52266, at 490712 to 492348 10948

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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485,834 + -0.6
485,845 + -1.7
485,862 - -2.7
485,987 - -0.2
485,992 + -0.1
486,000 + 1.2
486,000 + 1.2
486,117 - -0.2
486,121 + -1.2
486,124 - 2.0
486,151 - -0.5
486,194 - 1.4
486,431 - -2.2
486,604 + -1.6
486,693 + 10947 mRNA_2579 0.11 0.9
486,765 + 10947 mRNA_2579 0.13 0.8
487,035 - 10947 mRNA_2579 0.19 0.3
487,158 + 10947 mRNA_2579 0.22 0.4
487,432 + 10947 mRNA_2579 0.28 1.0
487,781 - 10947 mRNA_2579 0.36 0.6
487,858 + 10947 mRNA_2579 0.38 -1.2
488,060 + 10947 mRNA_2579 0.42 0.5
488,581 - 10947 mRNA_2579 0.54 2.5
489,231 - 10947 mRNA_2579 0.69 0.7
489,320 + 10947 mRNA_2579 0.71 2.8
489,410 + 10947 mRNA_2579 0.73 -0.5
489,508 + 10947 mRNA_2579 0.75 -2.4
489,519 - 10947 mRNA_2579 0.75 0.1
489,529 + 10947 mRNA_2579 0.75 -0.3
489,686 + 10947 mRNA_2579 0.79 0.1
489,796 + 10947 mRNA_2579 0.82 -0.5
490,158 + 10947 mRNA_2579 0.90 0.5
490,216 - 1.2
490,720 - 2.3
490,732 - -0.4
490,734 + 2.5
490,737 - 0.6
490,749 + -0.0
490,750 + 2.8
490,753 - 1.9
490,824 - 2.8
490,845 + 1.3
491,121 - 10948 mRNA_2580 0.25 0.3
491,194 - 10948 mRNA_2580 0.29 0.4
491,387 - 10948 mRNA_2580 0.41 0.3
491,425 - 10948 mRNA_2580 0.44 0.3
491,501 - 10948 mRNA_2580 0.48 0.3
491,582 + 10948 mRNA_2580 0.53 -1.9