Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2574

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2573: 10941 - K03848 ALG6 alpha-1,3-glucosyltransferase, at 474232 to 477732 10941 mRNA_2574: 10942 - K10158 B3GAT3 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 3, at 477863 to 478879 10942 mRNA_2575: 10943 - KOG1022 Acetylglucosaminyltransferase EXT2/exostosin 2, at 479011 to 480812 10943

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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476,925 + 10941 mRNA_2573 0.77 0.2
477,467 - 1.9
477,479 + 2.4
477,770 - 0.8
477,793 + 2.1
477,795 + -0.4
477,795 + 2.3
477,810 - 0.5
477,881 - -0.9
477,939 + 0.7
477,966 - 10942 mRNA_2574 0.10 -2.0
478,008 + 10942 mRNA_2574 0.14 0.2
478,075 - 10942 mRNA_2574 0.21 -1.2
478,231 + 10942 mRNA_2574 0.36 0.5
478,239 - 10942 mRNA_2574 0.37 -0.5
478,243 + 10942 mRNA_2574 0.37 -1.4
478,243 - 10942 mRNA_2574 0.37 0.3
478,360 + 10942 mRNA_2574 0.49 0.1
478,396 + 10942 mRNA_2574 0.52 -0.5
478,809 - -0.9
478,826 - 1.0
478,828 + -0.1
479,074 - 0.4
479,107 + -1.3
479,116 - 1.9
479,120 - -2.8
479,121 - 0.1
479,238 + 10943 mRNA_2575 0.13 -1.0
479,254 - 10943 mRNA_2575 0.13 -1.3
479,367 - 10943 mRNA_2575 0.20 1.0
479,544 + 10943 mRNA_2575 0.30 0.3
479,618 - 10943 mRNA_2575 0.34 0.4