Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2571

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2570: 10938 - SUPERFAMILY--SSF52266, at 468329 to 470280 10938 mRNA_2571: 10939 - HMMPfam-Methyltransferase domain-PF13679, at 470466 to 472507 10939 mRNA_2572: 10940 - K13093 HTATSF1 HIV Tat-specific factor 1, at 472476 to 474035 10940

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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469,525 - 10938 mRNA_2570 0.61 0.9
469,755 + 10938 mRNA_2570 0.73 0.1
469,789 - 10938 mRNA_2570 0.75 0.2
469,806 + 10938 mRNA_2570 0.76 2.3
469,899 - 10938 mRNA_2570 0.80 -0.1
470,059 + 10938 mRNA_2570 0.89 -0.3
470,132 - -0.9
470,136 + -2.2
470,219 - -0.5
470,230 - 0.1
470,334 - 0.7
470,364 + 0.3
470,370 - 0.3
470,378 + 0.4
470,392 + -0.4
470,414 + 0.4
470,414 + 0.9
470,454 + 2.5
470,458 + 0.8
470,473 + 0.3
471,051 - 10939 mRNA_2571 0.29 -1.0
471,311 - 10939 mRNA_2571 0.41 2.0
471,504 + 10939 mRNA_2571 0.51 2.9
471,909 + 10939 mRNA_2571 0.71 2.8
472,058 + 10939 mRNA_2571 0.78 0.6
472,092 - 10939 mRNA_2571 0.80 2.3
472,180 + 10939 mRNA_2571 0.84 -1.6
472,192 - 10939 mRNA_2571 0.85 0.4
472,207 - 10939 mRNA_2571 0.85 0.8
472,335 - 1.1
472,355 - -1.7
472,357 + 0.6
472,488 - 0.3