Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2570

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2569: 10937 - K07250 gabT 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase, at 466083 to 468142 10937 mRNA_2570: 10938 - SUPERFAMILY--SSF52266, at 468329 to 470280 10938 mRNA_2571: 10939 - HMMPfam-Methyltransferase domain-PF13679, at 470466 to 472507 10939

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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467,620 - 10937 mRNA_2569 0.75 0.7
467,871 + 10937 mRNA_2569 0.87 1.1
468,063 - 1.6
468,349 + -2.3
468,356 + 0.4
468,459 - -0.7
468,636 - 10938 mRNA_2570 0.16 0.0
468,661 + 10938 mRNA_2570 0.17 0.4
468,924 + 10938 mRNA_2570 0.30 1.1
469,264 - 10938 mRNA_2570 0.48 0.9
469,383 - 10938 mRNA_2570 0.54 0.2
469,525 - 10938 mRNA_2570 0.61 0.9
469,755 + 10938 mRNA_2570 0.73 0.1
469,789 - 10938 mRNA_2570 0.75 0.2
469,806 + 10938 mRNA_2570 0.76 2.3
469,899 - 10938 mRNA_2570 0.80 -0.1
470,059 + 10938 mRNA_2570 0.89 -0.3
470,132 - -0.9
470,136 + -2.2
470,219 - -0.5
470,230 - 0.1
470,334 - 0.7
470,364 + 0.3
470,370 - 0.3
470,378 + 0.4
470,392 + -0.4
470,414 + 0.4
470,414 + 0.9
470,454 + 2.5
470,458 + 0.8
470,473 + 0.3
471,051 - 10939 mRNA_2571 0.29 -1.0