Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2552

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2551: 10919 - K00799 GST, gst glutathione S-transferase, at 426245 to 427122 10919 mRNA_2552: 10920 - Hypothetical Protein, at 428082 to 428710 10920 mRNA_2553: 10921 - KOG2466 Uridine permease/thiamine transporter/allantoin transport, at 428822 to 431100 10921

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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427,455 + 0.6
427,482 - -1.0
427,493 - -1.6
427,494 - -0.1
427,507 + 0.3
427,516 - 0.4
427,625 - -0.6
427,744 - -0.1
427,756 - 0.4
427,756 - 1.3
427,761 + 1.3
427,779 - -0.9
427,783 - -0.3
427,795 + 0.9
428,026 + -0.2
428,040 + 1.9
428,086 + -0.3
428,105 - 1.6
428,121 - 1.4
428,237 - 10920 mRNA_2552 0.25 -0.4
428,265 + 10920 mRNA_2552 0.29 -0.4
428,265 - 10920 mRNA_2552 0.29 -0.4
428,384 - 10920 mRNA_2552 0.48 0.2
428,437 + 10920 mRNA_2552 0.56 1.2
428,553 + 10920 mRNA_2552 0.75 2.2
428,567 + 10920 mRNA_2552 0.77 1.6
428,821 + -0.7
429,016 - 1.5
429,264 - 10921 mRNA_2553 0.19 -0.1
429,270 - 10921 mRNA_2553 0.20 0.4
429,319 - 10921 mRNA_2553 0.22 2.3
429,520 - 10921 mRNA_2553 0.31 -0.1
429,577 - 10921 mRNA_2553 0.33 -0.3