Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2548

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2547: 10915 - HMMPfam-Protein kinase domain-PF00069,ProSiteProfiles-Protein kinase domain profile.-PS50011,SUPERFAMILY--SSF56112, at 416552 to 418992 10915 mRNA_2548: 10916 - KOG1943 Beta-tubulin folding cofactor D, at 419199 to 423600 10916 mRNA_2549: 10917 - HMMPfam-Chromatin modification-related protein EAF7-PF07904, at 423711 to 424964 10917

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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418,270 + 10915 mRNA_2547 0.70 -1.0
418,346 - 10915 mRNA_2547 0.73 2.2
418,463 - 10915 mRNA_2547 0.78 -1.3
418,534 + 10915 mRNA_2547 0.81 -0.5
418,537 - 10915 mRNA_2547 0.81 0.8
418,550 - 10915 mRNA_2547 0.82 2.8
418,628 - 10915 mRNA_2547 0.85 -0.1
418,669 - 10915 mRNA_2547 0.87 3.9
418,693 + 10915 mRNA_2547 0.88 0.8
418,995 - -1.9
419,022 - 0.0
419,147 - 2.5
419,151 - -0.3
419,157 + 0.3
419,165 + 1.0
419,336 + 0.1
420,187 - 10916 mRNA_2548 0.22 2.3
421,068 + 10916 mRNA_2548 0.42 -2.2
422,217 - 10916 mRNA_2548 0.69 -0.5
422,421 - 10916 mRNA_2548 0.73 -1.9
422,675 - 10916 mRNA_2548 0.79 -0.4
422,756 + 10916 mRNA_2548 0.81 0.6
422,883 - 10916 mRNA_2548 0.84 -1.6
423,269 - 0.3
423,297 + 0.6
423,359 - -0.5
423,382 - -0.8
423,456 + 0.7
424,147 - 10917 mRNA_2549 0.35 1.1
424,308 + 10917 mRNA_2549 0.48 1.6