Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2525

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2525: 10893 - KOG0590 Checkpoint kinase and related serine/threonine protein kinases, at 354865 to 358254 10893 mRNA_2526: 10894 - HMMPfam-Protein of unknown function (DUF1212)-PF06738,HMMPfam-Protein of unknown function (DUF3815)-PF12821, at 358856 to 360952 10894

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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353,869 - 1.4
354,353 - 0.6
354,577 - -1.4
354,754 + -1.1
354,763 + 0.0
354,780 + 2.2
354,931 + -0.8
355,232 + 10893 mRNA_2525 0.11 1.5
355,421 - 10893 mRNA_2525 0.16 -0.1
355,931 - 10893 mRNA_2525 0.31 0.5
355,932 + 10893 mRNA_2525 0.31 2.1
355,963 + 10893 mRNA_2525 0.32 1.4
356,058 - 10893 mRNA_2525 0.35 -0.9
356,223 - 10893 mRNA_2525 0.40 -0.6
356,225 - 10893 mRNA_2525 0.40 0.1
356,431 - 10893 mRNA_2525 0.46 -0.6
356,528 + 10893 mRNA_2525 0.49 0.6
356,534 - 10893 mRNA_2525 0.49 1.0
356,561 + 10893 mRNA_2525 0.50 -2.3
356,836 - 10893 mRNA_2525 0.58 -2.1
357,002 - 10893 mRNA_2525 0.63 0.1
357,034 - 10893 mRNA_2525 0.64 1.0
357,046 - 10893 mRNA_2525 0.64 -0.0
357,263 - 10893 mRNA_2525 0.71 0.5
357,272 + 10893 mRNA_2525 0.71 -0.5
357,678 - 10893 mRNA_2525 0.83 0.9
357,737 + 10893 mRNA_2525 0.85 -0.2
357,852 - 10893 mRNA_2525 0.88 1.1
358,009 - 0.8
358,013 - 2.2
358,021 - -0.1
358,046 + -0.6
358,144 - 0.6
358,213 + -0.0
358,307 - 1.2
358,336 + 1.7
358,384 + 2.5
358,387 - 1.8
358,447 + 1.2
358,462 - -0.1
358,530 - 0.2
358,577 + 0.0
358,593 + -2.9
358,599 - 0.9
358,613 - -1.1
358,653 - -0.2
358,680 + -1.1
358,692 - 2.2
358,766 - 0.6
358,994 + -0.5
359,140 - 10894 mRNA_2526 0.14 1.2
359,216 + 10894 mRNA_2526 0.17 0.6