Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2515

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2514: 10882 - Hypothetical Protein, at 330199 to 330672 10882 mRNA_2515: 10883 - KOG0035 Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily), at 330969 to 334313 10883 mRNA_2516: 10884 - KOG0627 Heat shock transcription factor, at 334568 to 336151 10884

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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329,983 - -0.3
330,024 + 1.9
330,026 + -0.6
330,238 + -1.8
330,404 + 10882 mRNA_2514 0.43 -0.6
330,459 - 10882 mRNA_2514 0.55 0.0
330,591 - 10882 mRNA_2514 0.83 0.8
330,605 + 10882 mRNA_2514 0.86 0.1
330,608 + 10882 mRNA_2514 0.86 1.4
330,647 - -0.2
330,647 - -0.0
330,741 - 0.9
330,751 - 0.9
330,764 + -0.3
330,787 - 0.9
330,793 - 1.0
330,794 + 0.3
330,794 + -0.2
330,797 - 3.1
330,920 + 0.8
330,924 + 0.8
330,925 + 1.9
332,388 + 10883 mRNA_2515 0.42 2.5
332,598 + 10883 mRNA_2515 0.49 1.7
332,781 - 10883 mRNA_2515 0.54 -0.4
334,252 + -0.5
334,321 + -0.4
335,112 - 10884 mRNA_2516 0.34 0.1