Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2508

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2507: 10875 - K11232 YPD1 osomolarity two-component system, phosphorelay intermediate protein YPD1, at 314960 to 315808 10875 mRNA_2508: 10876 - BLAST proteophosphoglycan ppg4 [Lichtheimia corymbifera JMR..., at 316713 to 320410 10876 mRNA_2509: 10877 - HMMPfam-PI31 proteasome regulator-PF08577,HMMPfam-PI31 proteasome regulator N-terminal-PF11566, at 320843 to 322229 10877

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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316,297 - -0.4
316,327 + -0.9
316,347 + 0.5
316,353 - 0.5
316,415 - -0.2
316,471 + 0.3
316,488 - 0.6
316,503 + -1.0
316,503 + 0.3
316,503 + -1.0
316,505 - -1.3
316,513 + -0.8
316,517 - 1.3
316,530 + 0.2
316,531 - -0.6
316,536 + 0.5
316,536 - -2.3
316,548 + 1.6
316,618 - -0.2
316,687 - 1.7
316,703 + 0.2
317,382 + 10876 mRNA_2508 0.18 0.5
318,169 + 10876 mRNA_2508 0.39 0.4
318,717 - 10876 mRNA_2508 0.54 -1.7
318,746 - 10876 mRNA_2508 0.55 -1.4
318,748 - 10876 mRNA_2508 0.55 0.5
319,240 + 10876 mRNA_2508 0.68 0.3
319,250 + 10876 mRNA_2508 0.69 0.2
319,302 + 10876 mRNA_2508 0.70 1.5
319,322 + 10876 mRNA_2508 0.71 0.6
319,325 - 10876 mRNA_2508 0.71 -0.0
319,325 - 10876 mRNA_2508 0.71 -0.5
319,325 - 10876 mRNA_2508 0.71 -0.2
319,355 + 10876 mRNA_2508 0.71 0.5
319,375 + 10876 mRNA_2508 0.72 1.9
319,441 - 10876 mRNA_2508 0.74 -1.3
319,925 - 10876 mRNA_2508 0.87 0.7
320,162 - -1.0
320,246 - 0.7
320,343 - -0.1
320,347 + 1.9
320,371 - -2.4
320,406 + 1.5
320,431 - 2.4
320,431 - -0.7
320,622 - -0.1
320,623 + 0.4
320,662 + 1.2
320,791 - 0.5
320,942 - 2.8
320,946 + -0.1
321,253 + 10877 mRNA_2509 0.30 0.8
321,258 - 10877 mRNA_2509 0.30 0.2
321,351 - 10877 mRNA_2509 0.37 0.6