Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2500

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2499: 10867 - BLAST secreted protein [Moniliophthora roreri MCA 2997], at 297402 to 298448 10867 mRNA_2500: 10868 - Hypothetical Protein, at 299018 to 301561 10868 mRNA_2501: 10869 - K00852 rbsK, RBKS ribokinase, at 301795 to 303224 10869

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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298,505 + 0.1
298,633 + 0.4
298,760 + 0.8
298,761 + -0.5
298,802 + 1.6
298,802 + -0.8
298,932 + 2.9
298,942 + -1.6
298,947 + -0.6
299,263 + -0.6
300,540 + 10868 mRNA_2500 0.60 2.3
300,693 + 10868 mRNA_2500 0.66 -0.4
300,815 - 10868 mRNA_2500 0.71 0.2
300,845 + 10868 mRNA_2500 0.72 0.7
301,417 - 0.9
301,431 + -2.6
301,587 + 1.1
301,714 - -0.3
301,853 - -1.1
301,996 + 10869 mRNA_2501 0.14 1.0
302,133 + 10869 mRNA_2501 0.24 -1.4
302,255 + 10869 mRNA_2501 0.32 -0.9
302,418 - 10869 mRNA_2501 0.44 0.9