Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2499

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2499: 10867 - BLAST secreted protein [Moniliophthora roreri MCA 2997], at 297402 to 298448 10867 mRNA_2500: 10868 - Hypothetical Protein, at 299018 to 301561 10868

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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296,509 - -2.2
296,512 + 1.0
296,517 + -1.0
296,526 - 0.9
296,529 - -0.8
296,539 - -0.1
296,624 - 0.2
296,639 - 1.2
296,719 - -2.6
296,781 - -1.1
296,792 - -0.8
296,794 + 0.1
296,811 + 1.1
296,816 - 0.8
296,821 - -1.4
296,824 + 0.8
296,932 + 0.8
296,945 - 1.6
296,945 - 0.0
296,948 + 0.5
296,948 - 0.9
296,949 + 0.1
296,952 - 1.3
296,953 + 1.8
296,955 - 0.7
296,957 + -1.1
296,960 + -1.1
296,967 - 1.5
296,973 - 0.3
296,980 - 1.6
296,986 + -0.4
296,993 - -0.3
296,997 + -0.4
297,001 + 1.5
297,024 + 0.9
297,054 - 1.5
297,088 - 1.2
297,097 - 3.1
297,128 + 0.8
297,139 + 2.6
297,146 - 0.4
297,154 + 1.1
297,271 - 1.3
297,281 - -0.2
297,289 - 0.6
297,290 + -1.4
297,290 + 1.4
297,299 + 2.1
297,337 - 2.3
297,418 - -0.1
297,441 + -2.4
297,464 + 1.1
297,570 + 10867 mRNA_2499 0.16 0.0
297,579 - 10867 mRNA_2499 0.17 1.9
297,741 + 10867 mRNA_2499 0.32 -0.7
297,751 - 10867 mRNA_2499 0.33 -1.0
298,505 + 0.1
298,633 + 0.4
298,760 + 0.8
298,761 + -0.5
298,802 + 1.6
298,802 + -0.8
298,932 + 2.9
298,942 + -1.6
298,947 + -0.6
299,263 + -0.6