Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2497

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2496: 10864 - KOG0254 Predicted transporter (major facilitator superfamily), at 288113 to 290739 10864 mRNA_2497: 10865 - KOG0379 Kelch repeat-containing proteins, at 291079 to 294153 10865

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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290,112 - 10864 mRNA_2496 0.76 1.6
290,113 + 10864 mRNA_2496 0.76 0.7
290,155 + 10864 mRNA_2496 0.78 2.0
290,193 + 10864 mRNA_2496 0.79 -0.4
290,196 - 10864 mRNA_2496 0.79 -0.4
290,263 - 10864 mRNA_2496 0.82 -0.4
290,345 + 10864 mRNA_2496 0.85 -0.6
290,392 - 10864 mRNA_2496 0.87 2.0
290,455 + 10864 mRNA_2496 0.89 2.5
290,495 - -0.3
290,536 - 0.4
290,539 - -1.8
290,554 + 1.5
290,559 + -0.0
290,562 + -0.3
290,562 + -0.3
290,593 + -0.1
290,612 + -0.7
290,634 + 2.0
290,702 + 0.5
290,724 + 0.6
290,751 - -0.2
290,827 - 1.6
290,957 + 0.9
290,994 + 2.8
291,053 - 1.5
291,085 + -2.1
291,127 - 1.5
291,472 - 10865 mRNA_2497 0.13 1.7
291,495 + 10865 mRNA_2497 0.14 0.3
291,764 - 10865 mRNA_2497 0.22 1.7
291,878 + 10865 mRNA_2497 0.26 0.0
291,891 - 10865 mRNA_2497 0.26 0.9
292,231 + 10865 mRNA_2497 0.37 0.8
292,528 - 10865 mRNA_2497 0.47 3.0
292,601 + 10865 mRNA_2497 0.49 -0.6
292,683 + 10865 mRNA_2497 0.52 -0.8
292,950 + 10865 mRNA_2497 0.61 0.9
293,400 + 10865 mRNA_2497 0.75 1.8
293,728 + 10865 mRNA_2497 0.86 0.5
293,943 + 1.8
293,966 - 1.2
293,976 + 0.4
293,998 - -0.2
294,134 + -0.2
294,299 - 0.2
294,326 - 2.7
294,438 - 1.3
294,450 - 1.8
294,543 - 1.0
294,578 - 0.3
294,580 - 0.4
294,717 + -0.1
294,729 - -0.5
294,731 + -1.8
294,738 - 1.3
294,773 - -1.6
294,855 - -0.4
294,863 - -0.1
294,869 + 1.7
294,875 + 0.8
294,875 - -0.1
294,879 + -1.1
294,888 + 0.2
294,915 + 0.4
294,918 - 0.5
294,991 - -1.1
294,996 - -0.1
295,011 + -0.3
295,015 + -1.2
295,025 - 0.9
295,028 + -1.2
295,036 + 0.8
295,037 + 0.9
295,039 - -0.8
295,041 - -1.8
295,042 + -0.1
295,044 - 2.8
295,045 + 0.6
295,045 - 1.9
295,048 + -1.0
295,048 - 1.7
295,050 + 0.1
295,054 + -0.2
295,069 + -0.8
295,083 + -0.0
295,099 + -0.6
295,101 - 1.3