Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2496

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2495: 10863 - K03507 DPB11 DNA replication regulator DPB11, at 283554 to 287606 10863 mRNA_2496: 10864 - KOG0254 Predicted transporter (major facilitator superfamily), at 288113 to 290739 10864 mRNA_2497: 10865 - KOG0379 Kelch repeat-containing proteins, at 291079 to 294153 10865

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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287,625 - 0.4
287,896 - 0.2
287,906 - 0.1
287,907 - 0.5
287,912 + 0.8
288,064 + 0.4
288,071 - 1.2
288,079 + 0.6
288,237 + -0.6
288,367 + 2.5
288,386 - 10864 mRNA_2496 0.10 -1.1
288,655 + 10864 mRNA_2496 0.21 -1.4
288,657 - 10864 mRNA_2496 0.21 -0.3
289,381 - 10864 mRNA_2496 0.48 0.1
289,685 + 10864 mRNA_2496 0.60 0.8
289,753 - 10864 mRNA_2496 0.62 0.2
290,112 - 10864 mRNA_2496 0.76 1.6
290,113 + 10864 mRNA_2496 0.76 0.7
290,155 + 10864 mRNA_2496 0.78 2.0
290,193 + 10864 mRNA_2496 0.79 -0.4
290,196 - 10864 mRNA_2496 0.79 -0.4
290,263 - 10864 mRNA_2496 0.82 -0.4
290,345 + 10864 mRNA_2496 0.85 -0.6
290,392 - 10864 mRNA_2496 0.87 2.0
290,455 + 10864 mRNA_2496 0.89 2.5
290,495 - -0.3
290,536 - 0.4
290,539 - -1.8
290,554 + 1.5
290,559 + -0.0
290,562 + -0.3
290,562 + -0.3
290,593 + -0.1
290,612 + -0.7
290,634 + 2.0
290,702 + 0.5
290,724 + 0.6
290,751 - -0.2
290,827 - 1.6
290,957 + 0.9
290,994 + 2.8
291,053 - 1.5
291,085 + -2.1
291,127 - 1.5
291,472 - 10865 mRNA_2497 0.13 1.7
291,495 + 10865 mRNA_2497 0.14 0.3