Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2483

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2482: 10850 - KOG0712 Molecular chaperone (DnaJ superfamily), at 252498 to 254224 10850 mRNA_2483: 10851 - K17541 SCYL2 SCY1-like protein 2, at 254371 to 257459 10851 mRNA_2484: 10852 - K11498 CENPE centromeric protein E, at 257699 to 260992 10852

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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253,402 - 10850 mRNA_2482 0.52 0.2
253,412 + 10850 mRNA_2482 0.53 -0.6
253,430 + 10850 mRNA_2482 0.54 2.2
253,557 - 10850 mRNA_2482 0.61 -0.7
253,684 + 10850 mRNA_2482 0.69 -0.9
253,859 - 10850 mRNA_2482 0.79 -1.0
253,981 - 10850 mRNA_2482 0.86 -1.0
253,986 + 10850 mRNA_2482 0.86 0.8
253,986 + 10850 mRNA_2482 0.86 0.0
253,994 - 10850 mRNA_2482 0.87 -0.5
254,036 + 10850 mRNA_2482 0.89 0.2
254,147 - -0.2
254,149 - 1.3
254,303 + -0.4
254,307 + -0.4
254,318 - 0.8
254,458 - -0.1
254,715 - 10851 mRNA_2483 0.11 0.0
254,721 - 10851 mRNA_2483 0.11 0.6
254,742 - 10851 mRNA_2483 0.12 3.0
254,751 + 10851 mRNA_2483 0.12 -1.3
254,871 + 10851 mRNA_2483 0.16 0.3
255,057 - 10851 mRNA_2483 0.22 -0.4
255,058 + 10851 mRNA_2483 0.22 0.2
255,316 - 10851 mRNA_2483 0.31 0.8
255,467 - 10851 mRNA_2483 0.35 1.7
255,570 + 10851 mRNA_2483 0.39 0.4
255,576 + 10851 mRNA_2483 0.39 -1.0
255,651 + 10851 mRNA_2483 0.41 -1.7
255,916 - 10851 mRNA_2483 0.50 -0.4
256,042 + 10851 mRNA_2483 0.54 -0.2
256,396 + 10851 mRNA_2483 0.66 -0.3
256,984 + 10851 mRNA_2483 0.85 -1.6
257,231 - 1.5
257,233 + 2.7
257,525 + -0.4
257,831 - -1.0
257,935 + 1.2
257,937 - -2.1
258,018 + 0.9