Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2473

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2472: 10840 - K07836 RAP1B Ras-related protein Rap-1B, at 228685 to 229666 10840 mRNA_2473: 10841 - K01610 E4.1.1.49, pckA phosphoenolpyruvate carboxykinase (ATP), at 230136 to 233558 10841 mRNA_2474: 10842 - KOG0603 Ribosomal protein S6 kinase, at 234258 to 235956 10842

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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229,652 - -0.1
229,657 + 0.6
229,804 + -0.1
230,109 + 0.8
230,544 + 10841 mRNA_2473 0.12 0.5
231,249 + 10841 mRNA_2473 0.33 0.4
231,260 - 10841 mRNA_2473 0.33 -0.6
231,261 + 10841 mRNA_2473 0.33 -1.8
231,421 + 10841 mRNA_2473 0.38 -0.5
231,527 - 10841 mRNA_2473 0.41 0.1
231,546 + 10841 mRNA_2473 0.41 0.4
231,688 - 10841 mRNA_2473 0.45 0.9
232,271 - 10841 mRNA_2473 0.62 0.1
232,275 + 10841 mRNA_2473 0.62 0.9
232,424 + 10841 mRNA_2473 0.67 0.7
232,426 + 10841 mRNA_2473 0.67 1.4
232,585 + 10841 mRNA_2473 0.72 -0.9
232,718 - 10841 mRNA_2473 0.75 0.2
232,871 - 10841 mRNA_2473 0.80 0.6
233,026 - 10841 mRNA_2473 0.84 -0.2
233,026 - 10841 mRNA_2473 0.84 -0.1
233,030 + 10841 mRNA_2473 0.85 1.0
233,044 - 10841 mRNA_2473 0.85 -0.1
233,049 - 10841 mRNA_2473 0.85 -0.0
233,050 - 10841 mRNA_2473 0.85 -0.1
233,053 + 10841 mRNA_2473 0.85 -0.9
233,056 + 10841 mRNA_2473 0.85 -0.8
233,058 + 10841 mRNA_2473 0.85 -0.3
233,058 + 10841 mRNA_2473 0.85 -0.7
233,061 + 10841 mRNA_2473 0.85 -0.7
233,062 + 10841 mRNA_2473 0.85 0.4
233,067 + 10841 mRNA_2473 0.86 0.2
233,089 - 10841 mRNA_2473 0.86 1.1
233,199 - 10841 mRNA_2473 0.89 1.6
233,206 - 10841 mRNA_2473 0.90 1.5
233,209 - 10841 mRNA_2473 0.90 0.3
233,213 + 10841 mRNA_2473 0.90 -0.3
233,224 + -0.6
233,226 - 0.6
233,234 + 2.1
233,235 - 0.8
233,235 + 0.3
233,236 + -1.0
233,236 + -0.9
233,240 - -0.6
233,242 + 0.1
233,245 - 0.3
233,247 + -0.5
233,248 + -0.3
233,249 - 0.9
233,252 - 1.7
233,257 + 1.1
233,258 + 1.9
233,258 - 0.6
233,258 + 0.2
233,260 + -0.1
233,303 - 1.9
233,304 + -0.3
233,304 + -0.9
233,309 + 0.3
233,309 + 0.3
233,312 + -2.7
233,318 - 0.2
233,324 - 0.5
233,325 - -0.3
233,327 + -0.2
233,330 - -0.6
233,331 - 0.9
233,331 - 1.0
233,334 + -0.1
233,338 - 0.1
233,340 + -2.0
233,346 - 0.0
233,347 + -0.7
233,349 + 0.9
233,353 + -0.4
233,356 + 1.1
233,356 - -0.1
233,359 - -1.5
233,360 - 0.6
233,361 - -0.1
233,370 - -1.1
233,374 + 1.9
233,385 + -1.5
233,386 - 2.7
233,485 - 0.2
233,502 - 2.0
233,508 + 3.4
233,513 + 2.0
233,514 - -0.0
233,639 + -0.1
233,830 + 1.2
233,860 - 0.6
233,926 + -0.4
233,950 - -0.4
233,966 + 0.5
234,238 + -2.1